diff options
Diffstat (limited to 'workflows/fastq2fasta/bcftools-view.cwl')
| -rw-r--r-- | workflows/fastq2fasta/bcftools-view.cwl | 19 |
1 files changed, 19 insertions, 0 deletions
diff --git a/workflows/fastq2fasta/bcftools-view.cwl b/workflows/fastq2fasta/bcftools-view.cwl new file mode 100644 index 0000000..2d1a51f --- /dev/null +++ b/workflows/fastq2fasta/bcftools-view.cwl @@ -0,0 +1,19 @@ +#!/usr/bin/env cwl-runner +class: CommandLineTool +cwlVersion: v1.1 +hints: + DockerRequirement: + dockerPull: "quay.io/biocontainers/bcftools:1.10.2--hd2cd319_0" +baseCommand: bcftools +arguments: + - view + - --no-version + - -Ou + - $(inputs.vcf) +inputs: + - id: vcf + type: File +outputs: + - id: bcf + type: stdout +stdout: $(inputs.vcf.nameroot).bcf |