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Diffstat (limited to 'workflows/fastq2fasta/bcftools-index.cwl')
| -rw-r--r-- | workflows/fastq2fasta/bcftools-index.cwl | 23 |
1 files changed, 23 insertions, 0 deletions
diff --git a/workflows/fastq2fasta/bcftools-index.cwl b/workflows/fastq2fasta/bcftools-index.cwl new file mode 100644 index 0000000..396b680 --- /dev/null +++ b/workflows/fastq2fasta/bcftools-index.cwl @@ -0,0 +1,23 @@ +#!/usr/bin/env cwl-runner +class: CommandLineTool +cwlVersion: v1.1 +hints: + DockerRequirement: + dockerPull: "quay.io/biocontainers/bcftools:1.10.2--hd2cd319_0" + InitialWorkDirRequirement: + listing: + - $(inputs.bcf) +baseCommand: bcftools +arguments: + - index + - $(inputs.bcf) +inputs: + - id: bcf + type: File +outputs: + - id: indexed + type: File + outputBinding: + glob: "$(inputs.bcf.basename)" + secondaryFiles: + - .csi |