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Diffstat (limited to 'doc/web/about.org')
| -rw-r--r-- | doc/web/about.org | 26 |
1 files changed, 19 insertions, 7 deletions
diff --git a/doc/web/about.org b/doc/web/about.org index 1949e2d..39fb667 100644 --- a/doc/web/about.org +++ b/doc/web/about.org @@ -9,6 +9,7 @@ - [[#why-should-i-not-upload-by-data-here][Why should I not upload by data here?]] - [[#how-does-the-public-sequence-resource-work][How does the public sequence resource work?]] - [[#who-uses-the-public-sequence-resource][Who uses the public sequence resource?]] + - [[#how-can-i-contribute][How can I contribute?]] - [[#is-this-about-open-data][Is this about open data?]] - [[#is-this-about-free-software][Is this about free software?]] - [[#how-do-i-upload-raw-data][How do I upload raw data?]] @@ -47,14 +48,17 @@ wrangling experts. Thank you everyone! The short version is that we use state-of-the-art practices in bioinformatics using agile methods. Unlike the resources from large institutes we can improve things on a dime and anyone can contribute -to building out this resource! +to building out this resource! Sequences from GenBank, EBI/ENA and +others are regularly added to PubSeq. We encourage people to everyone +to submit on PubSeq because of its superior live tooling and metadata +support (see the next question). Importantly: all data is published under either the [[https://creativecommons.org/licenses/by/4.0/][Creative Commons 4.0 attribution license]] or the [[https://creativecommons.org/share-your-work/public-domain/cc0/][CC0 “No Rights Reserved” license]] which means it data can be published and workflows can run in public environments allowing for improved access for research and reproducible results. This contrasts with some other public resources, -including GISAID. +such as GISAID. * Why should I upload my data here? @@ -77,7 +81,7 @@ including GISAID. 4. Your data will be used to develop drug targets Finally, if you upload your data here we have workflows that output -formatted data suitable for uploading to EBI resources (and soon +formatted data suitable for [[http://covid19.genenetwork.org/blog?id=using-covid-19-pubseq-part6][uploading to EBI resources]] (and soon others). Uploading your data here get your data ready for upload to multiple resources. @@ -109,8 +113,16 @@ https://covid-19-sparql.expasy.org/ and made it part of [[https://www.uniprot.or The Pantograph [[https://graph-genome.github.io/][viewer]] uses PubSeq data for their visualisations. -[[https://uthsc.edu][UTHSC]] and [[https://www.ornl.gov/news/ornl-fight-against-covid-19][ORNL]] use COVID-19 PubSeq data for protein prediction and -drug development. +[[https://uthsc.edu][UTHSC]] (USA), [[https://www.esr.cri.nz/][ESR]] (New Zealand) and [[https://www.ornl.gov/news/ornl-fight-against-covid-19][ORNL]] (USA) use COVID-19 PubSeq data +for monitoring, protein prediction and drug development. + +* How can I contribute? + +You can contribute by submitting sequences, updating metadata, submit +issues on our issue tracker, and more importantly add functionality. +See 'How do I change the source code' below. Read through our online +documentation at http://covid19.genenetwork.org/blog as a starting +point. * Is this about open data? @@ -140,8 +152,8 @@ See the [[http://covid19.genenetwork.org/blog]]! * How do I change the work flows? -Workflows are on [[https://github.com/arvados/bh20-seq-resource/tree/master/workflows][github]] and can be modified. See also the -[[[[http://covid19.genenetwork.org/blog]]][workflow blog]]. +Workflows are on [[https://github.com/arvados/bh20-seq-resource/tree/master/workflows][github]] and can be modified. See also the BLOG +[[http://covid19.genenetwork.org/blog]] on workflows. * How do I change the source code? |