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diff --git a/doc/blog/using-covid-19-pubseq-part2.org b/doc/blog/using-covid-19-pubseq-part2.org index d61bf42..d2a1cbc 100644 --- a/doc/blog/using-covid-19-pubseq-part2.org +++ b/doc/blog/using-covid-19-pubseq-part2.org @@ -8,6 +8,22 @@ #+HTML_LINK_HOME: http://covid19.genenetwork.org #+HTML_HEAD: <link rel="Blog stylesheet" type="text/css" href="blog.css" /> +As part of the COVID-19 Biohackathon 2020 we formed a working group to +create a COVID-19 Public Sequence Resource (COVID-19 PubSeq) for +Corona virus sequences. The general idea is to create a repository +that has a low barrier to entry for uploading sequence data using best +practices. I.e., data published with a creative commons 4.0 (CC-4.0) +license with metadata using state-of-the art standards and, perhaps +most importantly, providing standardised workflows that get triggered +on upload, so that results are immediately available in standardised +data formats. + +* Table of Contents :TOC:noexport: + - [[#finding-output-of-workflows][Finding output of workflows]] + - [[#introduction][Introduction]] + - [[#the-arvados-file-interface][The Arvados file interface]] + - [[#using-the-arvados-api][Using the Arvados API]] + * Finding output of workflows As part of the COVID-19 Biohackathon 2020 we formed a working group to |