diff options
Diffstat (limited to 'doc/INSTALL.md')
| -rw-r--r-- | doc/INSTALL.md | 6 |
1 files changed, 3 insertions, 3 deletions
diff --git a/doc/INSTALL.md b/doc/INSTALL.md index 6dcd72b..3b270dd 100644 --- a/doc/INSTALL.md +++ b/doc/INSTALL.md @@ -42,7 +42,7 @@ repository. ### Using the Web Uploader -To run the web uploader in a GNU Guix environment/container +To run the web uploader in a GNU Guix environment/container run it with something like ``` guix environment guix --ad-hoc git python python-flask python-pyyaml python-pycurl python-magic nss-certs --network openssl -- env FLASK_ENV=development PYTHONPATH=$PYTHONPATH:./bh20sequploader FLASK_APP=bh20simplewebuploader/main.py flask run @@ -59,7 +59,7 @@ WIP: add gunicorn container Currently the full webserver container deploy command looks like ``` -penguin2:~/iwrk/opensource/code/vg/bh20-seq-resource$ env GUIX_PACKAGE_PATH=~/iwrk/opensource/guix/guix-bioinformatics/ ~/iwrk/opensource/guix/guix/pre-inst-env guix environment -C guix --ad-hoc git python python-flask python-pyyaml python-pycurl python-magic nss-certs python-pyshex python-pyyaml --network openssl python-pyshex python-pyshexc clustalw python-schema-salad python-arvados-python-client --share=/export/tmp -- env TMPDIR=/export/tmp FLASK_ENV=development FLASK_APP=bh20simplewebuploader/main.py flask run -`` +penguin2:~/iwrk/opensource/code/vg/bh20-seq-resource$ env GUIX_PACKAGE_PATH=~/iwrk/opensource/guix/guix-oinformatics/ ~/iwrk/opensource/guix/guix/pre-inst-env guix environment -C guix --ad-hoc git python python-flask python-pyyaml python-pycurl python-magic nss-certs python-pyshex python-pyyaml --network openssl python-pyshex python-pyshexc clustalw python-schema-salad python-arvados-python-client --share=/export/tmp -- env TMPDIR=/export/tmp FLASK_ENV=development FLASK_APP=bh20simplewebuploader/main.py flask run +``` Note: see above on GUIX_PACKAGE_PATH. |