diff options
Diffstat (limited to 'bh20simplewebuploader')
| -rw-r--r-- | bh20simplewebuploader/templates/blurb.html | 10 | ||||
| -rw-r--r-- | bh20simplewebuploader/templates/footer.html | 6 | ||||
| -rw-r--r-- | bh20simplewebuploader/templates/form.html | 41 |
3 files changed, 40 insertions, 17 deletions
diff --git a/bh20simplewebuploader/templates/blurb.html b/bh20simplewebuploader/templates/blurb.html index 7bfe2ab..80fd384 100644 --- a/bh20simplewebuploader/templates/blurb.html +++ b/bh20simplewebuploader/templates/blurb.html @@ -7,4 +7,14 @@ and, perhaps most importantly, providing standardised workflows that get triggered on upload, so that results are immediately available in standardised data formats. + + Your uploaded sequence will automatically be processed and + incorporated into the public pangenome with metadata using worklows + from the High Performance Open Biology Lab + defined <a href="https://github.com/hpobio-lab/viral-analysis/tree/master/cwl/pangenome-generate">here</a>. Importantly, all + data is published under + a <a href="https://creativecommons.org/">Creative + Commons license</a> (CC0 or CC-BY-4.0). Anyone can take the + published (GFA/RDF/FASTA) data and use it for + further processing. </p> diff --git a/bh20simplewebuploader/templates/footer.html b/bh20simplewebuploader/templates/footer.html index e3923a7..0218278 100644 --- a/bh20simplewebuploader/templates/footer.html +++ b/bh20simplewebuploader/templates/footer.html @@ -6,9 +6,9 @@ <h1>ABOUT</h1> {% include 'blurb.html' %} <p> - The repository will be maintained and expanded for the - duration of the pandemic. To contribute data simply upload it! - To contribute code and/or workflows see + The repository will be maintained and expanded for the + duration of the pandemic (and beyond). To contribute data + simply upload it! To contribute code and/or workflows see the <a href="https://github.com/arvados/bh20-seq-resource">project repository</a>. For more information see the <a href="/about">FAQ</a> and diff --git a/bh20simplewebuploader/templates/form.html b/bh20simplewebuploader/templates/form.html index 3a1b03b..909c393 100644 --- a/bh20simplewebuploader/templates/form.html +++ b/bh20simplewebuploader/templates/form.html @@ -9,25 +9,38 @@ <form action="/submit" method="POST" enctype="multipart/form-data" id="main_form" class="grid-container"> <div class="intro"> <p> - Upload your SARS-CoV-2 sequence (FASTA or FASTQ formats) with metadata (JSONLD) to the <a href="https://workbench.lugli.arvadosapi.com/collections/lugli-4zz18-z513nlpqm03hpca">public sequence resource</a>. The upload will trigger a - recompute with all available sequences into a Pangenome - available for - <a href="https://collections.lugli.arvadosapi.com/c=lugli-4zz18-z513nlpqm03hpca/">download</a>! + Make your sequence + data <a href="https://en.wikipedia.org/wiki/FAIR_data">FAIR</a>. Upload + your SARS-CoV-2 sequence (FASTA or FASTQ + formats) with metadata (JSONLD) to + the <a href="/about">public sequence + resource</a>. The upload will trigger a + recompute with all available sequences into a + Pangenome available for + <a href="/download">download</a>! </p> <p> - Your uploaded sequence will automatically be processed - and incorporated into the public pangenome with - metadata using worklows from the High Performance Open Biology Lab defined <a href="https://github.com/hpobio-lab/viral-analysis/tree/master/cwl/pangenome-generate">here</a>. All data is published under + Your uploaded sequence will automatically be + processed and incorporated into the public + pangenome with metadata using worklows from + the High Performance Open Biology Lab + defined <a href="https://github.com/hpobio-lab/viral-analysis/tree/master/cwl/pangenome-generate">here</a>. All + data is published under a <a href="https://creativecommons.org/licenses/by/4.0/">Creative - Commons 4.0 attribution license</a> (CC-BY-4.0). You - can take the published (GFA/RDF/FASTA) data and store it in - a triple store for further processing. We also plan to - combine identifiers with clinical data stored securely at <a href="https://redcap-covid19.elixir-luxembourg.org/redcap/">REDCap</a>. - A free command line version of the uploader can be - installed from <a href="https://github.com/arvados/bh20-seq-resource">source</a>. + Commons license</a> You can take the published + (GFA/RDF/FASTA) data and store it in a triple + store for further processing. Clinical + data can be stored + securely + at <a href="https://redcap-covid19.elixir-luxembourg.org/redcap/">REDCap</a>. </p> <p> - Note that form fields contain web <a href="https://en.wikipedia.org/wiki/Web_Ontology_Language">onthology URI's</a> for <a href="https://en.wikipedia.org/wiki/Wikipedia:Disambiguation">disambiguation</a> and machine readable metadata. For examples of use, see the <a href="https://github.com/arvados/bh20-seq-resource/blob/master/doc/blog/using-covid-19-pubseq-part1.org">BLOG</a>. + Note that form fields contain + web <a href="https://en.wikipedia.org/wiki/Web_Ontology_Language">onthology + URI's</a> + for <a href="https://en.wikipedia.org/wiki/Wikipedia:Disambiguation">disambiguation</a> + and machine readable metadata. For examples of + use, see the <a href="/blog">BLOG</a>. </p> </div> |