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-rw-r--r--bh20sequploader/bh20seq-schema.yml4
-rw-r--r--bh20sequploader/bh20seq-shex.rdf25
2 files changed, 17 insertions, 12 deletions
diff --git a/bh20sequploader/bh20seq-schema.yml b/bh20sequploader/bh20seq-schema.yml
index 1ceebe2..80013c3 100644
--- a/bh20sequploader/bh20seq-schema.yml
+++ b/bh20sequploader/bh20seq-schema.yml
@@ -25,7 +25,7 @@ $graph:
jsonldPredicate:
_id: http://semanticscience.org/resource/SIO_000115
host_sex:
- doc: Sex of the host as defined in NCIT, IRI expected (http://purl.obolibrary.org/obo/NCIT_C20197 (Male), http://purl.obolibrary.org/obo/NCIT_C27993 (Female), http://purl.obolibrary.org/obo/NCIT_C45908 (Intersex), or http://purl.obolibrary.org/obo/NCIT_C17998 (Unknown))
+ doc: Sex of the host as defined in PATO, expect male () or female ()
type: string?
jsonldPredicate:
_id: http://purl.obolibrary.org/obo/PATO_0000047
@@ -144,7 +144,7 @@ $graph:
fields:
sample_sequencing_technology:
doc: Technology that was used to sequence this sample (e.g Sanger, Nanopor MiniION)
- type: string
+ type: string?
jsonldPredicate:
_id: http://purl.obolibrary.org/obo/OBI_0600047
_type: "@id"
diff --git a/bh20sequploader/bh20seq-shex.rdf b/bh20sequploader/bh20seq-shex.rdf
index 31e714f..8d0055e 100644
--- a/bh20sequploader/bh20seq-shex.rdf
+++ b/bh20sequploader/bh20seq-shex.rdf
@@ -23,35 +23,40 @@ PREFIX wikidata: <http://www.wikidata.org/entity/>
obo:PATO_0000047 [ obo:PATO_0000384 obo:PATO_0000383 ] ?;
obo:PATO_0000011 xsd:integer ?;
obo:NCIT_C42574 [ obo:UO_~ ] ?;
- sio:SIO_001167 xsd:string ?;
+ obo:NCIT_C25688 xsd:string ? ;
efo:EFO_0000727 xsd:string ?;
+ obo:VO_0000002 xsd:string ?;
+ sio:SIO_001167 xsd:string ?;
}
:sampleShape {
sio:SIO_000115 xsd:string;
- obo:GAZ_00000448 [wikidata:~] ;
evs:C25164 xsd:string;
+ obo:GAZ_00000448 [wikidata:~] ;
obo:OBI_0001895 xsd:string ?;
- sio:SIO_001167 xsd:string ?;
- obo:OBI_0001472 xsd:string ?;
+ obo:NCIT_C41206 xsd:string ?;
obo:OBI_0001479 IRI {0,2};
+ obo:OBI_0001472 xsd:string ?;
+ sio:SIO_001167 xsd:string ?;
}
:submitterShape {
obo:NCIT_C42781 xsd:string ;
- obo:NCIT_C37984 xsd:string ?;
- obo:NCIT_C37900 xsd:string ?;
sio:SIO_000116 xsd:string ?;
- obo:OBI_0600047 xsd:string ?;
- sio:SIO_000115 /https:\u002F\u002Forcid.org\u002F.{4}-.{4}-.{4}-.{4}/?;
sio:SIO_000172 xsd:string ?;
+ obo:NCIT_C37984 xsd:string ?;
+ obo:OBI_0600047 xsd:string ?;
+ obo:NCIT_C37900 xsd:string ?;
efo:EFO_0001741 xsd:string ?;
+ obo:NCIT_C19026 xsd:string ?;
+ sio:SIO_000115 /https:\u002F\u002Forcid.org\u002F.{4}-.{4}-.{4}-.{4}/?;
}
:technologyShape {
- obo:OBI_0600047 IRI {0,2} ;
- obo:FLU_0000848 xsd:double ?;
+ obo:OBI_0600047 IRI {0,2} ?;
efo:EFO_0002699 xsd:string ?;
+ obo:FLU_0000848 xsd:double {0,2};
+ sio:SIO_001167 xsd:string ?;
}
:virusShape{