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-rw-r--r--bh20sequploader/bh20seq-shex.rdf14
1 files changed, 7 insertions, 7 deletions
diff --git a/bh20sequploader/bh20seq-shex.rdf b/bh20sequploader/bh20seq-shex.rdf
index 365a6e6..69bd7f4 100644
--- a/bh20sequploader/bh20seq-shex.rdf
+++ b/bh20sequploader/bh20seq-shex.rdf
@@ -12,7 +12,7 @@ PREFIX evs: <http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#>
PREFIX edam: <http://edamontology.org/>
PREFIX wikidata: <http://www.wikidata.org/entity/>
-:submissionShape {
+:submissionShape CLOSED {
MainSchema:host @:hostShape ;
MainSchema:sample @:sampleShape ;
MainSchema:submitter @:submitterShape ;
@@ -24,7 +24,7 @@ PREFIX wikidata: <http://www.wikidata.org/entity/>
## documentation: #(name of option in yaml), ontology label, mandatory|optional, type
## entries marked with ?????? need review
-:hostShape {
+:hostShape CLOSED {
efo:EFO_0000532 [ obo:NCBITaxon_~ ] ; #(host_species host), mandatory field, from namespace obo:NCBITaxon
sio:SIO_000115 xsd:string ?; #(host_id), identifier, optional string
obo:PATO_0000047 [ obo:PATO_0000384 obo:PATO_0000383 obo:PATO_0001340] ?; #(host_sex) biological sex, optional, one selected value
@@ -37,7 +37,7 @@ PREFIX wikidata: <http://www.wikidata.org/entity/>
sio:SIO_001167 xsd:string ?; #(additional_host_information), comment, optional, string
}
-:sampleShape {
+:sampleShape CLOSED {
sio:SIO_000115 xsd:string; #(sampleId), identifier, mandatory string
evs:C25164 xsd:string; #(collection_date), date, mandatory, string but should be date
obo:GAZ_00000448 [wikidata:~] ; #(collection_location), geographic location, mandatory, from wikidata namespace
@@ -49,7 +49,7 @@ PREFIX wikidata: <http://www.wikidata.org/entity/>
edam:data_2091 IRI {0,3}; #(source_database_accession), Accession, optional, IRI 0-3
}
-:submitterShape {
+:submitterShape CLOSED {
obo:NCIT_C42781 xsd:string + ; #(authors), Author, mandatory, list 1-*
sio:SIO_000116 xsd:string *; #(submitter_name), name, optional 0-*
sio:SIO_000172 xsd:string ?; #(submitter_address), address, optional, string
@@ -62,7 +62,7 @@ PREFIX wikidata: <http://www.wikidata.org/entity/>
sio:SIO_001167 xsd:string ?; #(additional_submitter_information), comment, optional string
}
-:technologyShape {
+:technologyShape CLOSED {
obo:OBI_0600047 IRI {1,3} ; #(sample_sequencing_technology), sequencing assay, optional
obo:GENEPIO_0000090 [obo:GENEPIO_0001628 obo:GENEPIO_0002028 ] ; #(assembly method), assembly method, mandatory, one of the two
efo:EFO_0004917 xsd:string ?; #(alignment_protocol), high throughput sequence alignment protocol, optional
@@ -70,12 +70,12 @@ PREFIX wikidata: <http://www.wikidata.org/entity/>
sio:SIO_001167 xsd:string ?; #(additional_technology_information), comment, optional, string
}
-:virusShape{
+:virusShape CLOSED {
edam:data_1875 [ obo:NCBITaxon_~ ] ; # (virus_species) NCBI taxon, mandatory, from namespace obo:NCBITaxon_
sio:SIO_010055 xsd:string ?; # (virus_strain) strain, optional string
}
-:licenseShape{
+:licenseShape CLOSED {
cc:License [ cclicenses:~ ] ;
dc:Title xsd:string ?;
cc:attributionName xsd:string ?;