diff options
Diffstat (limited to 'bh20sequploader/main.py')
| -rw-r--r-- | bh20sequploader/main.py | 9 |
1 files changed, 3 insertions, 6 deletions
diff --git a/bh20sequploader/main.py b/bh20sequploader/main.py index cdc4c3f..8555e2b 100644 --- a/bh20sequploader/main.py +++ b/bh20sequploader/main.py @@ -26,11 +26,9 @@ def qc_stuff(metadata, sequence_p1, sequence_p2, do_qc=True): try: log.debug("Checking metadata" if do_qc else "Skipping metadata check") if do_qc and not qc_metadata(metadata.name): - log.warning("Failed metadata qc") - exit(1) - except ValueError as e: + raise Exception("Failed metadata qc") + except Exception as e: log.debug(e) - log.debug("Failed metadata qc") print(e) exit(1) @@ -42,9 +40,8 @@ def qc_stuff(metadata, sequence_p1, sequence_p2, do_qc=True): target.append(qc_fasta(sequence_p2)) target[0] = ("reads_1."+target[0][0][6:], target[0][1]) target[1] = ("reads_2."+target[1][0][6:], target[0][1]) - except ValueError as e: + except Exception as e: log.debug(e) - log.debug("Failed FASTA qc") print(e) exit(1) |