diff options
| -rw-r--r-- | bh20simplewebuploader/main.py | 4 | ||||
| -rw-r--r-- | semantic_enrichment/countries.ttl | 99 |
2 files changed, 84 insertions, 19 deletions
diff --git a/bh20simplewebuploader/main.py b/bh20simplewebuploader/main.py index 81fe571..0cc22df 100644 --- a/bh20simplewebuploader/main.py +++ b/bh20simplewebuploader/main.py @@ -493,12 +493,12 @@ def getAllaccessions(): # parameter must be encoded e.g. http://arvados.org/keep:6e6276698ed8b0e6cd21f523e4f91179+123/sequence.fasta must become -# http%3A%2F%2Farvados.org%2Fkeep%3A6e6276698ed8b0e6cd21f523e4f91179%2B123%2Fsequence.fasta +# http%3A%2F%2Fcollections.lugli.arvadosapi.com%2Fc%3D00a6af865453564f6a59b3d2c81cc7c1%2B123%2Fsequence.fasta @app.route('/api/getDetailsForSeq', methods=['GET']) def getDetailsForSeq(): seq_id = request.args.get('seq') query="""SELECT DISTINCT ?key ?key_label ?value WHERE { - <http://arvados.org/keep:00a6af865453564f6a59b3d2c81cc7c1+123/sequence.fasta> ?x [?key ?value] . + <placeholder> ?x [?key ?value] . OPTIONAL {?key <http://www.w3.org/2000/01/rdf-schema#label> ?key_tmp_label } . BIND(IF(BOUND(?key_tmp_label),?key_tmp_label, ?key) as ?key_label)}""" query=query.replace("placeholder", seq_id) diff --git a/semantic_enrichment/countries.ttl b/semantic_enrichment/countries.ttl index 0f364fc..416567f 100644 --- a/semantic_enrichment/countries.ttl +++ b/semantic_enrichment/countries.ttl @@ -112,10 +112,6 @@ ns1:P17 <http://www.wikidata.org/entity/Q30> ; ns1:P625 "Point(-100.0 41.5)" . -<http://www.wikidata.org/entity/Q1558> rdfs:label "Kansas" ; - ns1:P17 <http://www.wikidata.org/entity/Q30> ; - ns1:P625 "Point(-98.0 38.5)" . - <http://www.wikidata.org/entity/Q1581> rdfs:label "Missouri" ; ns1:P17 <http://www.wikidata.org/entity/Q30> ; ns1:P625 "Point(-92.5 38.5)" . @@ -128,15 +124,22 @@ ns1:P17 <http://www.wikidata.org/entity/Q148> ; ns1:P625 "Point(113.258976 23.128795)" . +<http://www.wikidata.org/entity/Q183314> rdfs:label "Khyber Pakhtunkhwa" ; + ns1:P17 <http://www.wikidata.org/entity/Q843> ; + ns1:P625 "Point(71.32 34.0)" . + <http://www.wikidata.org/entity/Q1854> rdfs:label "Ho Chi Minh City" ; ns1:P17 <http://www.wikidata.org/entity/Q881> ; - ns1:P625 "Point(106.62965 10.82302)", - "Point(106.633333333 10.816666666)" . + ns1:P625 "Point(106.633333333 10.816666666)" . <http://www.wikidata.org/entity/Q198244> rdfs:label "Zhuozhou" ; ns1:P17 <http://www.wikidata.org/entity/Q148> ; ns1:P625 "Point(115.99176 39.48873)" . +<http://www.wikidata.org/entity/Q3551781> rdfs:label "District of Columbia" ; + ns1:P17 <http://www.wikidata.org/entity/Q30> ; + ns1:P625 "Point(-77.008611111 38.916944444)" . + <http://www.wikidata.org/entity/Q36687> rdfs:label "Victoria" ; ns1:P17 <http://www.wikidata.org/entity/Q408> ; ns1:P625 "Point(144.0 -37.0)" . @@ -149,10 +152,18 @@ ns1:P17 <http://www.wikidata.org/entity/Q148> ; ns1:P625 "Point(120.1675 30.25)" . +<http://www.wikidata.org/entity/Q609024> rdfs:label "Gilgit" ; + ns1:P17 <http://www.wikidata.org/entity/Q843> ; + ns1:P625 "Point(74.289166666 35.921944444)" . + <http://www.wikidata.org/entity/Q62> rdfs:label "San Francisco" ; ns1:P17 <http://www.wikidata.org/entity/Q30> ; ns1:P625 "Point(-122.416388888 37.7775)" . +<http://www.wikidata.org/entity/Q65> rdfs:label "Los Angeles" ; + ns1:P17 <http://www.wikidata.org/entity/Q30> ; + ns1:P625 "Point(-118.24368 34.05223)" . + <http://www.wikidata.org/entity/Q759> rdfs:label "New Hampshire" ; ns1:P17 <http://www.wikidata.org/entity/Q30> ; ns1:P625 "Point(-71.5 44.0)" . @@ -189,6 +200,10 @@ ns1:P17 <http://www.wikidata.org/entity/Q30> ; ns1:P625 "Point(-111.5 39.5)" . +<http://www.wikidata.org/entity/Q8646> rdfs:label "Hong Kong" ; + ns1:P17 <http://www.wikidata.org/entity/Q148> ; + ns1:P625 "Point(114.158611111 22.278333333)" . + <http://www.wikidata.org/entity/Q8686> rdfs:label "Shanghai" ; ns1:P17 <http://www.wikidata.org/entity/Q148> ; ns1:P625 "Point(121.466666666 31.166666666)" . @@ -205,75 +220,125 @@ ns1:P17 <http://www.wikidata.org/entity/Q30> ; ns1:P625 "Point(-120.0 37.0)" . -<http://www.wikidata.org/entity/Q142> rdfs:label "France" ; - ns1:P17 <http://www.wikidata.org/entity/Q142> ; - ns1:P625 "Point(2.0 47.0)" . +<http://www.wikidata.org/entity/Q15> rdfs:label "Africa" . <http://www.wikidata.org/entity/Q155> rdfs:label "Brazil" ; ns1:P17 <http://www.wikidata.org/entity/Q155> ; + ns1:P30 <http://www.wikidata.org/entity/Q18> ; ns1:P625 "Point(-53.0 -14.0)" . -<http://www.wikidata.org/entity/Q258> rdfs:label "South Africa" . +<http://www.wikidata.org/entity/Q213> rdfs:label "Czech Republic" ; + ns1:P17 <http://www.wikidata.org/entity/Q213> ; + ns1:P30 <http://www.wikidata.org/entity/Q46> ; + ns1:P625 "Point(16.0 50.0)" . -<http://www.wikidata.org/entity/Q29> rdfs:label "Spain" . +<http://www.wikidata.org/entity/Q258> rdfs:label "South Africa" ; + ns1:P30 <http://www.wikidata.org/entity/Q15> . <http://www.wikidata.org/entity/Q33> rdfs:label "Finland" ; ns1:P17 <http://www.wikidata.org/entity/Q33> ; + ns1:P30 <http://www.wikidata.org/entity/Q46> ; ns1:P625 "Point(27.0 65.0)" . <http://www.wikidata.org/entity/Q34> rdfs:label "Sweden" ; ns1:P17 <http://www.wikidata.org/entity/Q34> ; + ns1:P30 <http://www.wikidata.org/entity/Q46> ; ns1:P625 "Point(15.0 61.0)" . <http://www.wikidata.org/entity/Q38> rdfs:label "Italy" ; ns1:P17 <http://www.wikidata.org/entity/Q38> ; + ns1:P30 <http://www.wikidata.org/entity/Q46> ; ns1:P625 "Point(12.5 42.5)" . -<http://www.wikidata.org/entity/Q408> rdfs:label "Australia" . +<http://www.wikidata.org/entity/Q408> rdfs:label "Australia" ; + ns1:P30 <http://www.wikidata.org/entity/Q538> . <http://www.wikidata.org/entity/Q41> rdfs:label "Greece" ; ns1:P17 <http://www.wikidata.org/entity/Q41> ; + ns1:P30 <http://www.wikidata.org/entity/Q46> ; ns1:P625 "Point(23.0 38.5)" . <http://www.wikidata.org/entity/Q419> rdfs:label "Peru" ; ns1:P17 <http://www.wikidata.org/entity/Q419> ; + ns1:P30 <http://www.wikidata.org/entity/Q18> ; ns1:P625 "Point(-76.0 -9.4)" . <http://www.wikidata.org/entity/Q43> rdfs:label "Turkey" ; ns1:P17 <http://www.wikidata.org/entity/Q43> ; + ns1:P30 <http://www.wikidata.org/entity/Q46>, + <http://www.wikidata.org/entity/Q48> ; ns1:P625 "Point(36.0 39.0)" . -<http://www.wikidata.org/entity/Q668> rdfs:label "India" . +<http://www.wikidata.org/entity/Q49> rdfs:label "North America" . -<http://www.wikidata.org/entity/Q739> rdfs:label "Colombia" . +<http://www.wikidata.org/entity/Q668> rdfs:label "India" ; + ns1:P30 <http://www.wikidata.org/entity/Q48> . + +<http://www.wikidata.org/entity/Q739> rdfs:label "Colombia" ; + ns1:P30 <http://www.wikidata.org/entity/Q18> . <http://www.wikidata.org/entity/Q794> rdfs:label "Iran" ; ns1:P17 <http://www.wikidata.org/entity/Q794> ; + ns1:P30 <http://www.wikidata.org/entity/Q48> ; ns1:P625 "Point(53.0 32.0)" . <http://www.wikidata.org/entity/Q801> rdfs:label "Israel" ; ns1:P17 <http://www.wikidata.org/entity/Q801> ; + ns1:P30 <http://www.wikidata.org/entity/Q48> ; ns1:P625 "Point(35.0 31.0)" . +<http://www.wikidata.org/entity/Q833> rdfs:label "Malaysia" ; + ns1:P17 <http://www.wikidata.org/entity/Q833> ; + ns1:P30 <http://www.wikidata.org/entity/Q48> ; + ns1:P625 "Point(108.0 3.0)" . + <http://www.wikidata.org/entity/Q837> rdfs:label "Nepal" ; ns1:P17 <http://www.wikidata.org/entity/Q837> ; + ns1:P30 <http://www.wikidata.org/entity/Q48> ; ns1:P625 "Point(84.0 28.0)" . +<http://www.wikidata.org/entity/Q854> rdfs:label "Sri Lanka" ; + ns1:P17 <http://www.wikidata.org/entity/Q854> ; + ns1:P30 <http://www.wikidata.org/entity/Q48> ; + ns1:P625 "Point(81.0 7.0)" . + <http://www.wikidata.org/entity/Q865> rdfs:label "Taiwan" ; ns1:P17 <http://www.wikidata.org/entity/Q865> ; + ns1:P30 <http://www.wikidata.org/entity/Q48> ; ns1:P625 "Point(121.0 24.0)" . -<http://www.wikidata.org/entity/Q881> rdfs:label "Vietnam" . +<http://www.wikidata.org/entity/Q881> rdfs:label "Vietnam" ; + ns1:P30 <http://www.wikidata.org/entity/Q48> . <http://www.wikidata.org/entity/Q884> rdfs:label "South Korea" ; ns1:P17 <http://www.wikidata.org/entity/Q884> ; + ns1:P30 <http://www.wikidata.org/entity/Q48> ; ns1:P625 "Point(128.0 36.0)" . +<http://www.wikidata.org/entity/Q29> rdfs:label "Spain" ; + ns1:P17 <http://www.wikidata.org/entity/Q29> ; + ns1:P30 <http://www.wikidata.org/entity/Q46> ; + ns1:P625 "Point(-3.0 40.0)" . + +<http://www.wikidata.org/entity/Q538> rdfs:label "Oceania" . + +<http://www.wikidata.org/entity/Q843> rdfs:label "Pakistan" ; + ns1:P30 <http://www.wikidata.org/entity/Q48> . + +<http://www.wikidata.org/entity/Q18> rdfs:label "South America" . + +<http://www.wikidata.org/entity/Q46> rdfs:label "Europe" . + <http://www.wikidata.org/entity/Q148> rdfs:label "People's Republic of China" ; ns1:P17 <http://www.wikidata.org/entity/Q148> ; - ns1:P625 "Point(103.0 35.0)" . + ns1:P30 <http://www.wikidata.org/entity/Q48> ; + ns1:P625 "Point(103.451944444 35.844722222)" . + +<http://www.wikidata.org/entity/Q48> rdfs:label "Asia" . <http://www.wikidata.org/entity/Q30> rdfs:label "United States of America" ; ns1:P17 <http://www.wikidata.org/entity/Q30> ; - ns1:P625 "Point(-77.036666666 38.895)" . + ns1:P30 <http://www.wikidata.org/entity/Q49>, + <http://www.wikidata.org/entity/Q538> ; + ns1:P625 "Point(-98.5795 39.828175)" . |