diff options
| -rw-r--r-- | bh20sequploader/bh20seq-schema.yml | 6 | ||||
| -rw-r--r-- | example/metadata.yaml | 2 | ||||
| -rw-r--r-- | example/minimal_example.yaml | 2 |
3 files changed, 7 insertions, 3 deletions
diff --git a/bh20sequploader/bh20seq-schema.yml b/bh20sequploader/bh20seq-schema.yml index 5000f08..64008f2 100644 --- a/bh20sequploader/bh20seq-schema.yml +++ b/bh20sequploader/bh20seq-schema.yml @@ -87,12 +87,12 @@ $graph: _type: "@id" collection_date: doc: Date when the sample was taken - type: string? + type: string jsonldPredicate: _id: http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C25164 collection_location: doc: Geographical location where the sample was collected as wikidata reference, e.g. http://www.wikidata.org/entity/Q148 (China) - type: string? + type: string jsonldPredicate: _id: http://purl.obolibrary.org/obo/GAZ_00000448 _type: "@id" @@ -214,6 +214,8 @@ $graph: type: string? jsonldPredicate: _id: http://semanticscience.org/resource/SIO_000115 + _type: "@id" + noLinkCheck: true - name: MainSchema type: record diff --git a/example/metadata.yaml b/example/metadata.yaml index 1e7f29c..8bbf980 100644 --- a/example/metadata.yaml +++ b/example/metadata.yaml @@ -17,7 +17,7 @@ sample: collecting_institution: Institute that was responsible of sampeling specimen_source: http://purl.obolibrary.org/obo/NCIT_C155831 specimen_source2: http://purl.obolibrary.org/obo/NCIT_C155835 - collection_date: Date when the sample was taken + collection_date: 2020-01-01 collection_location: http://www.wikidata.org/entity/Q148 sample_storage_conditions: XXX additional_collection_information: XXX diff --git a/example/minimal_example.yaml b/example/minimal_example.yaml index f4118d1..ed578e2 100644 --- a/example/minimal_example.yaml +++ b/example/minimal_example.yaml @@ -8,6 +8,8 @@ sample: sample_id: XX collector_name: John Doe collecting_institution: Doe university + collection_date: 2020-01 + collection_location: http://www.wikidata.org/entity/Q148 virus: virus_species: http://purl.obolibrary.org/obo/NCBITaxon_2697049 |