diff options
| -rw-r--r-- | bh20sequploader/bh20seq-shex.rdf | 14 |
1 files changed, 7 insertions, 7 deletions
diff --git a/bh20sequploader/bh20seq-shex.rdf b/bh20sequploader/bh20seq-shex.rdf index 365a6e6..69bd7f4 100644 --- a/bh20sequploader/bh20seq-shex.rdf +++ b/bh20sequploader/bh20seq-shex.rdf @@ -12,7 +12,7 @@ PREFIX evs: <http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#> PREFIX edam: <http://edamontology.org/> PREFIX wikidata: <http://www.wikidata.org/entity/> -:submissionShape { +:submissionShape CLOSED { MainSchema:host @:hostShape ; MainSchema:sample @:sampleShape ; MainSchema:submitter @:submitterShape ; @@ -24,7 +24,7 @@ PREFIX wikidata: <http://www.wikidata.org/entity/> ## documentation: #(name of option in yaml), ontology label, mandatory|optional, type ## entries marked with ?????? need review -:hostShape { +:hostShape CLOSED { efo:EFO_0000532 [ obo:NCBITaxon_~ ] ; #(host_species host), mandatory field, from namespace obo:NCBITaxon sio:SIO_000115 xsd:string ?; #(host_id), identifier, optional string obo:PATO_0000047 [ obo:PATO_0000384 obo:PATO_0000383 obo:PATO_0001340] ?; #(host_sex) biological sex, optional, one selected value @@ -37,7 +37,7 @@ PREFIX wikidata: <http://www.wikidata.org/entity/> sio:SIO_001167 xsd:string ?; #(additional_host_information), comment, optional, string } -:sampleShape { +:sampleShape CLOSED { sio:SIO_000115 xsd:string; #(sampleId), identifier, mandatory string evs:C25164 xsd:string; #(collection_date), date, mandatory, string but should be date obo:GAZ_00000448 [wikidata:~] ; #(collection_location), geographic location, mandatory, from wikidata namespace @@ -49,7 +49,7 @@ PREFIX wikidata: <http://www.wikidata.org/entity/> edam:data_2091 IRI {0,3}; #(source_database_accession), Accession, optional, IRI 0-3 } -:submitterShape { +:submitterShape CLOSED { obo:NCIT_C42781 xsd:string + ; #(authors), Author, mandatory, list 1-* sio:SIO_000116 xsd:string *; #(submitter_name), name, optional 0-* sio:SIO_000172 xsd:string ?; #(submitter_address), address, optional, string @@ -62,7 +62,7 @@ PREFIX wikidata: <http://www.wikidata.org/entity/> sio:SIO_001167 xsd:string ?; #(additional_submitter_information), comment, optional string } -:technologyShape { +:technologyShape CLOSED { obo:OBI_0600047 IRI {1,3} ; #(sample_sequencing_technology), sequencing assay, optional obo:GENEPIO_0000090 [obo:GENEPIO_0001628 obo:GENEPIO_0002028 ] ; #(assembly method), assembly method, mandatory, one of the two efo:EFO_0004917 xsd:string ?; #(alignment_protocol), high throughput sequence alignment protocol, optional @@ -70,12 +70,12 @@ PREFIX wikidata: <http://www.wikidata.org/entity/> sio:SIO_001167 xsd:string ?; #(additional_technology_information), comment, optional, string } -:virusShape{ +:virusShape CLOSED { edam:data_1875 [ obo:NCBITaxon_~ ] ; # (virus_species) NCBI taxon, mandatory, from namespace obo:NCBITaxon_ sio:SIO_010055 xsd:string ?; # (virus_strain) strain, optional string } -:licenseShape{ +:licenseShape CLOSED { cc:License [ cclicenses:~ ] ; dc:Title xsd:string ?; cc:attributionName xsd:string ?; |