diff options
| -rw-r--r-- | scripts/dict_ontology_standardization/ncbi_countries.csv | 35 | ||||
| -rw-r--r-- | scripts/dict_ontology_standardization/ncbi_speciesman_source.csv | 13 |
2 files changed, 43 insertions, 5 deletions
diff --git a/scripts/dict_ontology_standardization/ncbi_countries.csv b/scripts/dict_ontology_standardization/ncbi_countries.csv index 2599b62..618e3e1 100644 --- a/scripts/dict_ontology_standardization/ncbi_countries.csv +++ b/scripts/dict_ontology_standardization/ncbi_countries.csv @@ -1,6 +1,20 @@ 30.59 N 114.3 E,http://www.wikidata.org/entity/Q11746 35.92 N 74.33 E,http://www.wikidata.org/entity/Q609024 39.54 N 116.23 E,http://www.wikidata.org/entity/Q198244 +22.3039019 N 73.1680977 E,http://www.wikidata.org/entity/Q11909 +22.3394 N 114.166 E,http://www.wikidata.org/entity/Q8646 +22.6813385 N 72.8771793 E,http://www.wikidata.org/entity/Q219039 +23.052214 N 72.603157 E,http://www.wikidata.org/entity/Q1070 +23.0524508 N 72.600668 E,http://www.wikidata.org/entity/Q1070 +24.5046286 N 72.0209126 E,http://www.wikidata.org/entity/Q1266017 +40.71 N 74.00 W,http://www.wikidata.org/entity/Q11253 +41.31 N 72.92 W,http://www.wikidata.org/entity/Q49145 +43.0731 N 89.4012 W,http://www.wikidata.org/entity/Q43788 +44.3148 N 85.6024 W,http://www.wikidata.org/entity/Q22086086 +51.06 N 6.12 E,http://www.wikidata.org/entity/Q14833 +51.22 N 6.77 E,http://www.wikidata.org/entity/Q1718 +22.3137564 N 73.1465874 E,http://www.wikidata.org/entity/Q11909 +"22.8197678 N 72.7573375 E",http://www.wikidata.org/entity/Q2233469 Afghanistan,http://www.wikidata.org/entity/Q889 Albania,http://www.wikidata.org/entity/Q222 Algeria,http://www.wikidata.org/entity/Q262 @@ -237,11 +251,11 @@ India:Kerala State,http://www.wikidata.org/entity/Q1186 "India:Vadodara",http://www.wikidata.org/entity/Q11909 "India:Gujarat, Vadodara",http://www.wikidata.org/entity/Q11909 "India:Hyderabad",http://www.wikidata.org/entity/Q1361 -"India:hamadan",http://www.wikidata.org/entity/Q1361 -"India:Hamadan",http://www.wikidata.org/entity/Q28587 +"Iran:hamadan",http://www.wikidata.org/entity/Q1361 +"Iran:Hamadan",http://www.wikidata.org/entity/Q28587 "Iraq:Erbil",http://www.wikidata.org/entity/Q132754 "Iraq:Kurdistan region, Erbil",http://www.wikidata.org/entity/Q132754 -"Iraq:Kurdistan region, Erbil",http://www.wikidata.org/entity/Q132754 +"Iraq:Kuedistan region, Erbil",http://www.wikidata.org/entity/Q132754 Indonesia,http://www.wikidata.org/entity/Q252 Iran,http://www.wikidata.org/entity/Q794 Iran:Qum,http://www.wikidata.org/entity/Q131664 @@ -294,6 +308,7 @@ Mauritania,http://www.wikidata.org/entity/Q1025 Mauritius,http://www.wikidata.org/entity/Q1027 Mexico,http://www.wikidata.org/entity/Q96 Mexico:Baja California Sur,http://www.wikidata.org/entity/Q46508 +"Mexico:Tijuana, BajaCalifornia",http://www.wikidata.org/entity/Q124739 Mexico:Hidalgo,http://www.wikidata.org/entity/Q80903 Mexico:Mexico City,http://www.wikidata.org/entity/Q1489 Mexico:Mexico State,http://www.wikidata.org/entity/Q82112 @@ -409,6 +424,8 @@ Tonga,http://www.wikidata.org/entity/Q678 Trinidad and Tobago,http://www.wikidata.org/entity/Q754 Tunisia,http://www.wikidata.org/entity/Q948 Tunisia:Tunis,http://www.wikidata.org/entity/Q3572 +Tunisia:Ben Arous,http://www.wikidata.org/entity/Q816443 +Tunisia:Bizerte,http://www.wikidata.org/entity/Q189546 Turkey,http://www.wikidata.org/entity/Q43 Turkmenistan,http://www.wikidata.org/entity/Q874 Tuvalu,http://www.wikidata.org/entity/Q672 @@ -428,11 +445,13 @@ USA:AL,http://www.wikidata.org/entity/Q173 "USA:Alabama",http://www.wikidata.org/entity/Q173 "USA:Alabama, Mobile county",http://www.wikidata.org/entity/Q495738 "USA:Arizona, Maricopa county",http://www.wikidata.org/entity/Q58691 +"USA:Maricopa County, Arizona",http://www.wikidata.org/entity/Q58691 "USA:Arkansas, Little Rock",http://www.wikidata.org/entity/Q33405 "USA:Avondale, LA",http://www.wikidata.org/entity/Q79449 "USA:AVONDALE, LA",http://www.wikidata.org/entity/Q79449 "USA:CA, Alameda",http://www.wikidata.org/entity/Q490744 "USA:California, Los Angeles county",http://www.wikidata.org/entity/Q104994 +"USA:California,Los Angeles County",http://www.wikidata.org/entity/Q104994 "USA:California, San Diego county",http://www.wikidata.org/entity/Q108143 "USA:California, Santa Clara county",http://www.wikidata.org/entity/Q110739 "USA:Colorado, Denver county",http://www.wikidata.org/entity/Q15906757 @@ -455,6 +474,7 @@ USA:AL,http://www.wikidata.org/entity/Q173 "USA:Illinois, Winnebago county",http://www.wikidata.org/entity/Q110606 "USA:Illinois, Winnebago County",http://www.wikidata.org/entity/Q110606 "USA:Imperial, California",http://www.wikidata.org/entity/Q169952 +"USA:South Carolina, Fairfield",http://www.wikidata.org/entity/Q323432 "USA:Iowa, Dubuque county",http://www.wikidata.org/entity/Q113756 "USA:Iowa, Jackson county",http://www.wikidata.org/entity/Q485780 "USA:Killona, LA",http://www.wikidata.org/entity/Q1844136 @@ -508,18 +528,22 @@ USA:New Hampshire,http://www.wikidata.org/entity/Q759 "USA:Wisconsin, Dane county",http://www.wikidata.org/entity/Q502200 "USA:Wisconsin, Dane County",http://www.wikidata.org/entity/Q502200 "USA:Wisconsin, Dodge County",http://www.wikidata.org/entity/Q372796 +"USA:Wisconsin, Dodge county",http://www.wikidata.org/entity/Q372796 "USA:Wisconsin, Fond du Lac county",http://www.wikidata.org/entity/Q494912 "USA:Wisconsin, Grant county",http://www.wikidata.org/entity/Q500977 "USA:Wisconsin, Green county",http://www.wikidata.org/entity/Q489163 "USA:Wisconsin, Jackson county",http://www.wikidata.org/entity/Q500897 +"USA:Wisconsin, Jefferson county",http://www.wikidata.org/entity/Q500958 "USA:Wisconsin, Lafayette county",http://www.wikidata.org/entity/Q431440 "USA:Wisconsin, Manitowoc county",http://www.wikidata.org/entity/Q500984 +"USA:Wisconsin, Marquette county",http://www.wikidata.org/entity/Q500918 "USA:Wisconsin, Milwaukee county",http://www.wikidata.org/entity/Q502294 "USA:Wisconsin, Monroe county",http://www.wikidata.org/entity/Q932966 "USA:Wisconsin, Outagamie county",http://www.wikidata.org/entity/Q510244 "USA:Wisconsin, Ozaukee county",http://www.wikidata.org/entity/Q505874 "USA:Wisconsin, Racine county",http://www.wikidata.org/entity/Q510122 "USA:Wisconsin, Richland county",http://www.wikidata.org/entity/Q501596 +"USA:Wisconsin, Rock county",http://www.wikidata.org/entity/Q500939 "USA:Wisconsin, Sauk county",http://www.wikidata.org/entity/Q500933 "USA:Wisconsin, Sheboygan county",http://www.wikidata.org/entity/Q500803 "USA:Wisconsin, Trempealeau county",http://www.wikidata.org/entity/Q494923 @@ -587,8 +611,8 @@ USA:KS,http://www.wikidata.org/entity/Q1558 USA:KY,http://www.wikidata.org/entity/Q1603 USA:LA,http://www.wikidata.org/entity/Q65 USA:Los Angeles,http://www.wikidata.org/entity/Q65 -"USA:SLIDELL, LA, LA",https://www.wikidata.org/wiki/Q988156 -"USA:Slidell, LA, LA",https://www.wikidata.org/wiki/Q988156 +"USA:SLIDELL, LA",https://www.wikidata.org/wiki/Q988156 +"USA:Slidell, LA",https://www.wikidata.org/wiki/Q988156 "USA:Seattle, WA",https://www.wikidata.org/wiki/Q5083 "USA:New Orleans, LA",https://www.wikidata.org/wiki/Q34404 "USA:NEW ORLEANS, LA",https://www.wikidata.org/wiki/Q34404 @@ -647,6 +671,7 @@ USA:SD,http://www.wikidata.org/entity/Q1211 "USA:King County,WA",http://www.wikidata.org/entity/Q108861 "USA:Washington,Jefferson County",http://www.wikidata.org/entity/Q384737 "USA:Washington, Jefferson County",http://www.wikidata.org/entity/Q384737 +"USA:Washington, Jefferson county",http://www.wikidata.org/entity/Q384737 "USA:Washington,Grant County",http://www.wikidata.org/entity/Q281681 "USA:Washington, Grant County",http://www.wikidata.org/entity/Q281681 "USA:Washington,Franklin County",http://www.wikidata.org/entity/Q118716 diff --git a/scripts/dict_ontology_standardization/ncbi_speciesman_source.csv b/scripts/dict_ontology_standardization/ncbi_speciesman_source.csv index 0fa2219..42168e6 100644 --- a/scripts/dict_ontology_standardization/ncbi_speciesman_source.csv +++ b/scripts/dict_ontology_standardization/ncbi_speciesman_source.csv @@ -1,14 +1,23 @@ nasopharyngeal swab,http://purl.obolibrary.org/obo/NCIT_C155831 +Nasopharyngeal swab,http://purl.obolibrary.org/obo/NCIT_C155831 +NPS,http://purl.obolibrary.org/obo/NCIT_C155831 +NasopharyngealSwab,http://purl.obolibrary.org/obo/NCIT_C155831 +Naso-pharyngeal swab,http://purl.obolibrary.org/obo/NCIT_C155831 +nasopharingeal swab,http://purl.obolibrary.org/obo/NCIT_C155831 +Nasopharyngeal (NP) Swab,http://purl.obolibrary.org/obo/NCIT_C155831 nasopharyngeal swabs,http://purl.obolibrary.org/obo/NCIT_C155831 nasopharyngeal exudate,http://purl.obolibrary.org/obo/NCIT_C155831 nasopharyngeal,http://purl.obolibrary.org/obo/NCIT_C155831 +Nasopharyngeal,http://purl.obolibrary.org/obo/NCIT_C155831 respiratory swab,http://purl.obolibrary.org/obo/NCIT_C155831 naso-pharyngeal exudate,http://purl.obolibrary.org/obo/NCIT_C155831 nasopharyngeal aspirate,http://purl.obolibrary.org/obo/NCIT_C155831 nasal swab specimen,http://purl.obolibrary.org/obo/NCIT_C155831 +nasal swal,http://purl.obolibrary.org/obo/NCIT_C155831 pharyngeal swab,http://purl.obolibrary.org/obo/NCIT_C155831 respiratory secretion,http://purl.obolibrary.org/obo/NCIT_C155831 mid-nasal swab,http://purl.obolibrary.org/obo/NCIT_C155831 +Mid-nasal swab,http://purl.obolibrary.org/obo/NCIT_C155831 nasopharyngeal (throat) washings,http://purl.obolibrary.org/obo/NCIT_C155831 oropharyngeal swab,http://purl.obolibrary.org/obo/NCIT_C155835 throat swab,http://purl.obolibrary.org/obo/NCIT_C155835 @@ -16,7 +25,10 @@ oro-pharyngeal,http://purl.obolibrary.org/obo/NCIT_C155835 Oropharyngal,http://purl.obolibrary.org/obo/NCIT_C155835 oralpharyngeal,http://purl.obolibrary.org/obo/NCIT_C155835 Oral-pharyngeal,http://purl.obolibrary.org/obo/NCIT_C155835 +oral-pharyngeal,http://purl.obolibrary.org/obo/NCIT_C155835 +oro-pharngyl swab,http://purl.obolibrary.org/obo/NCIT_C155835 Oro-pharyngeal swab,http://purl.obolibrary.org/obo/NCIT_C155835 +oro-pharyngeal swab,http://purl.obolibrary.org/obo/NCIT_C155835 Oropharyngeal swab,http://purl.obolibrary.org/obo/NCIT_C155835 oro pharyngeal swab,http://purl.obolibrary.org/obo/NCIT_C155835 buccal swab,http://purl.obolibrary.org/obo/NCIT_C155835 @@ -33,4 +45,5 @@ aspirate,http://purl.obolibrary.org/obo/NCIT_C13347 stool,http://purl.obolibrary.org/obo/NCIT_C13234 serum,http://purl.obolibrary.org/obo/NCIT_C13325 saliva,http://purl.obolibrary.org/obo/NCIT_C13275 +Deep throat saliva,http://purl.obolibrary.org/obo/NCIT_C13275 nasal swab,http://purl.obolibrary.org/obo/NCIT_C132119 |