aboutsummaryrefslogtreecommitdiff
path: root/workflows/update-workflows.sh
diff options
context:
space:
mode:
authorPeter Amstutz2020-11-09 16:55:33 -0500
committerPeter Amstutz2020-11-09 16:55:33 -0500
commitb5143c79de268b844f3a6a63d92c6389b047f35e (patch)
treea840b28cdb10bc59adebca6cd0222ce0b717f48e /workflows/update-workflows.sh
parent0d1831449d7541e0ec36fd75793915d144a02b5d (diff)
downloadbh20-seq-resource-b5143c79de268b844f3a6a63d92c6389b047f35e.tar.gz
bh20-seq-resource-b5143c79de268b844f3a6a63d92c6389b047f35e.tar.lz
bh20-seq-resource-b5143c79de268b844f3a6a63d92c6389b047f35e.zip
Make it so "pangenome analysis" only runs collect-seqs.
Will ensure that metadata is kept up to date. GFA isn't being generated. Will introduce new workflow that uses from_sparql to analyze a subset. Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Diffstat (limited to 'workflows/update-workflows.sh')
-rwxr-xr-xworkflows/update-workflows.sh2
1 files changed, 1 insertions, 1 deletions
diff --git a/workflows/update-workflows.sh b/workflows/update-workflows.sh
index 3b69a58..5182ec4 100755
--- a/workflows/update-workflows.sh
+++ b/workflows/update-workflows.sh
@@ -1,3 +1,3 @@
#!/bin/sh
arvados-cwl-runner --project-uuid=lugli-j7d0g-5hswinmpyho8dju --update-workflow=lugli-7fd4e-2zp9q4jo5xpif9y fastq2fasta/fastq2fasta.cwl
-arvados-cwl-runner --project-uuid=lugli-j7d0g-5hswinmpyho8dju --update-workflow=lugli-7fd4e-mqfu9y3ofnpnho1 pangenome-generate/arv-main.cwl
+arvados-cwl-runner --project-uuid=lugli-j7d0g-5hswinmpyho8dju --update-workflow=lugli-7fd4e-mqfu9y3ofnpnho1 pangenome-generate/collect-seqs.cwl