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| author | Peter Amstutz | 2020-08-19 15:19:07 -0400 |
|---|---|---|
| committer | Peter Amstutz | 2020-08-19 16:31:38 -0400 |
| commit | b3d2ccf951903ac0b7d717357fb1cccca26fbd15 (patch) | |
| tree | 92adcacbd208546bf3f063e6c25765e660972244 /workflows/pangenome-generate/spoa.cwl | |
| parent | 592c921a3223c03d8a22f7a852641ac5d753fb31 (diff) | |
| download | bh20-seq-resource-b3d2ccf951903ac0b7d717357fb1cccca26fbd15.tar.gz bh20-seq-resource-b3d2ccf951903ac0b7d717357fb1cccca26fbd15.tar.lz bh20-seq-resource-b3d2ccf951903ac0b7d717357fb1cccca26fbd15.zip | |
Consolidate steps to scale graph generation workflow
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Diffstat (limited to 'workflows/pangenome-generate/spoa.cwl')
| -rw-r--r-- | workflows/pangenome-generate/spoa.cwl | 4 |
1 files changed, 2 insertions, 2 deletions
diff --git a/workflows/pangenome-generate/spoa.cwl b/workflows/pangenome-generate/spoa.cwl index 1e390d8..132633c 100644 --- a/workflows/pangenome-generate/spoa.cwl +++ b/workflows/pangenome-generate/spoa.cwl @@ -2,8 +2,7 @@ cwlVersion: v1.1 class: CommandLineTool inputs: readsFA: File -stdout: $(inputs.readsFA.nameroot).g6.gfa -script: + script: type: File default: {class: File, location: relabel-seqs.py} outputs: @@ -20,6 +19,7 @@ hints: ramMin: $(15 * 1024) outdirMin: $(Math.ceil(inputs.readsFA.size/(1024*1024*1024) + 20)) baseCommand: spoa +stdout: $(inputs.readsFA.nameroot).g6.gfa arguments: [ $(inputs.readsFA), -G, |