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| author | Peter Amstutz | 2020-05-26 17:30:30 -0400 |
|---|---|---|
| committer | Peter Amstutz | 2020-05-26 18:12:23 -0400 |
| commit | 7a96d0b1b15ab28fe3a618db35364891ab5d0328 (patch) | |
| tree | 570532d2cc4c490175a4042d7bfabaad5120312d /workflows/pangenome-generate/pangenome-generate.cwl | |
| parent | 30f3f8b0e9efbc954518fc8ea621b53c9591c83a (diff) | |
| download | bh20-seq-resource-7a96d0b1b15ab28fe3a618db35364891ab5d0328.tar.gz bh20-seq-resource-7a96d0b1b15ab28fe3a618db35364891ab5d0328.tar.lz bh20-seq-resource-7a96d0b1b15ab28fe3a618db35364891ab5d0328.zip | |
Can have list of sequence labels to exclude from combined fasta
refs #68
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Diffstat (limited to 'workflows/pangenome-generate/pangenome-generate.cwl')
| -rw-r--r-- | workflows/pangenome-generate/pangenome-generate.cwl | 2 |
1 files changed, 2 insertions, 0 deletions
diff --git a/workflows/pangenome-generate/pangenome-generate.cwl b/workflows/pangenome-generate/pangenome-generate.cwl index ad8b27f..9118cf8 100644 --- a/workflows/pangenome-generate/pangenome-generate.cwl +++ b/workflows/pangenome-generate/pangenome-generate.cwl @@ -9,6 +9,7 @@ inputs: metadata: File[] metadataSchema: File subjects: string[] + exclude: File? bin_widths: type: int[] default: [ 1, 4, 16, 64, 256, 1000, 4000, 16000] @@ -47,6 +48,7 @@ steps: in: readsFA: inputReads subjects: subjects + exclude: exclude out: [relabeledSeqs, originalLabels] run: relabel-seqs.cwl dedup: |