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| author | Peter Amstutz | 2020-05-11 10:38:15 -0400 |
|---|---|---|
| committer | GitHub | 2020-05-11 10:38:15 -0400 |
| commit | 55bab826fda6c6bc3190476f8e2c61e51ef092d6 (patch) | |
| tree | 02cc9ec2a79fa0c04ded33ccec009ebe03331f39 /workflows/pangenome-generate/odgi-viz.cwl | |
| parent | 20b446c79420b1d5c9742caed6713b7a3e5991f4 (diff) | |
| parent | ca7df27a6349e7b7009e1d1d5fec372106a072b1 (diff) | |
| download | bh20-seq-resource-55bab826fda6c6bc3190476f8e2c61e51ef092d6.tar.gz bh20-seq-resource-55bab826fda6c6bc3190476f8e2c61e51ef092d6.tar.lz bh20-seq-resource-55bab826fda6c6bc3190476f8e2c61e51ef092d6.zip | |
Merge pull request #49 from mr-c/add_pangenome_browser_prep
add pangenome browser prep
Diffstat (limited to 'workflows/pangenome-generate/odgi-viz.cwl')
| -rw-r--r-- | workflows/pangenome-generate/odgi-viz.cwl | 25 |
1 files changed, 0 insertions, 25 deletions
diff --git a/workflows/pangenome-generate/odgi-viz.cwl b/workflows/pangenome-generate/odgi-viz.cwl deleted file mode 100644 index d440fcb..0000000 --- a/workflows/pangenome-generate/odgi-viz.cwl +++ /dev/null @@ -1,25 +0,0 @@ -cwlVersion: v1.1 -class: CommandLineTool -inputs: - inputODGI: File -outputs: - odgiPNG: - type: File - outputBinding: - glob: $(inputs.inputODGI.nameroot).png -requirements: - InlineJavascriptRequirement: {} -hints: - DockerRequirement: - dockerPull: "quay.io/biocontainers/odgi:v0.3--py37h8b12597_0" - ResourceRequirement: - coresMin: 4 - ramMin: $(7 * 1024) - outdirMin: 1 -baseCommand: [odgi, viz] -arguments: [-i, $(inputs.inputODGI), - -o, $(inputs.inputODGI.nameroot).png, - -x, "50000", - -y, "500", - -R, - -P, "4"] |