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authorPeter Amstutz2020-11-18 17:03:01 -0500
committerPeter Amstutz2020-11-18 17:05:12 -0500
commit81daa0acc4c4a0827e1c1198f054f4d4dacd1daf (patch)
treeb1370c876394e36cb65947dbb37b094536d117ed /workflows/pangenome-generate/arvados-and-samtools-dockerfile
parentee8ea88dd6b372143c6b08f56856666ce2d0b622 (diff)
downloadbh20-seq-resource-81daa0acc4c4a0827e1c1198f054f4d4dacd1daf.tar.gz
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Add query-to-gfa workflow
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Diffstat (limited to 'workflows/pangenome-generate/arvados-and-samtools-dockerfile')
-rw-r--r--workflows/pangenome-generate/arvados-and-samtools-dockerfile/1078ECD7.key30
-rw-r--r--workflows/pangenome-generate/arvados-and-samtools-dockerfile/Dockerfile10
2 files changed, 40 insertions, 0 deletions
diff --git a/workflows/pangenome-generate/arvados-and-samtools-dockerfile/1078ECD7.key b/workflows/pangenome-generate/arvados-and-samtools-dockerfile/1078ECD7.key
new file mode 100644
index 0000000..edc62f4
--- /dev/null
+++ b/workflows/pangenome-generate/arvados-and-samtools-dockerfile/1078ECD7.key
@@ -0,0 +1,30 @@
+-----BEGIN PGP PUBLIC KEY BLOCK-----
+
+mQENBEzhgeoBCAChhoK1dqpWzNyDWqRGEvdFdkJaA9D2HRwKPfBfjAoePX6ZyrpA
+ItlUsvt/8s/DRiTiPEFQR4S7VqocmU6whJc3gDEGyOM6b1NF873lIfSVwUoE42QE
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+yPet6wIKrtLGhAqZ
+=CLkG
+-----END PGP PUBLIC KEY BLOCK-----
diff --git a/workflows/pangenome-generate/arvados-and-samtools-dockerfile/Dockerfile b/workflows/pangenome-generate/arvados-and-samtools-dockerfile/Dockerfile
new file mode 100644
index 0000000..6f857ac
--- /dev/null
+++ b/workflows/pangenome-generate/arvados-and-samtools-dockerfile/Dockerfile
@@ -0,0 +1,10 @@
+FROM debian:10
+ENV DEBIAN_FRONTEND noninteractive
+RUN apt-get update -q
+RUN apt-get install -yq --no-install-recommends gnupg
+ADD 1078ECD7.key /tmp/
+RUN cat /tmp/1078ECD7.key | apt-key add -
+RUN echo 'deb http://apt.arvados.org/ buster main' > /etc/apt/sources.list.d/apt.arvados.org-stable.list
+RUN apt-get update -q && apt-get install -yq --no-install-recommends samtools python3-python-client
+RUN rm -f /usr/bin/python && ln -s /usr/share/python3/dist/python3-python-client/bin/python /usr/bin/python
+RUN rm -f /usr/bin/python3 && ln -s /usr/share/python3/dist/python3-python-client/bin/python /usr/bin/python3