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| author | Peter Amstutz | 2020-06-22 18:23:40 +0000 |
|---|---|---|
| committer | Peter Amstutz | 2020-06-22 18:25:45 +0000 |
| commit | 76883d02e6073f990ea980dad1f8cf21121255ff (patch) | |
| tree | 0fe93dadf69cb5c0c09ff9b98fe18e5baacdd6c4 /workflows/fastq2fasta/bam2fasta.cwl | |
| parent | fcf300d0df032f569f21b3ef75a78bb163f55da0 (diff) | |
| download | bh20-seq-resource-76883d02e6073f990ea980dad1f8cf21121255ff.tar.gz bh20-seq-resource-76883d02e6073f990ea980dad1f8cf21121255ff.tar.lz bh20-seq-resource-76883d02e6073f990ea980dad1f8cf21121255ff.zip | |
Adjust QC filter and relabel output sequence with sample_id
Diffstat (limited to 'workflows/fastq2fasta/bam2fasta.cwl')
| -rw-r--r-- | workflows/fastq2fasta/bam2fasta.cwl | 2 |
1 files changed, 2 insertions, 0 deletions
diff --git a/workflows/fastq2fasta/bam2fasta.cwl b/workflows/fastq2fasta/bam2fasta.cwl index efe580f..dd4020b 100644 --- a/workflows/fastq2fasta/bam2fasta.cwl +++ b/workflows/fastq2fasta/bam2fasta.cwl @@ -15,6 +15,7 @@ inputs: threads: type: int default: 4 + sample_id: string outputs: out_fasta: @@ -61,5 +62,6 @@ steps: in: ref_fasta: fasta vcf: bcftools_index_after_qc/indexed + sample_id: sample_id out: [out_fasta] run: bcftools-consensus.cwl |