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authorPeter Amstutz2020-07-03 21:24:00 +0000
committerPeter Amstutz2020-07-03 21:24:00 +0000
commit33ed39e9e82d4f8e4af27f2f0d0676977d367137 (patch)
treeac2e7cc6ca35080e85bc36dbe03f38304073108b /scripts
parent36f5c5b58a2de662eae9f379e66a9695d300dc2e (diff)
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Add upload.cwl
Diffstat (limited to 'scripts')
-rw-r--r--scripts/upload.cwl13
1 files changed, 13 insertions, 0 deletions
diff --git a/scripts/upload.cwl b/scripts/upload.cwl
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index 0000000..0fed09a
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+++ b/scripts/upload.cwl
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+cwlVersion: v1.1
+class: CommandLineTool
+inputs:
+ fasta: File
+ metadata: File
+outputs: []
+requirements:
+ DockerRequirement:
+ dockerPull: bh20-seq-uploader/import
+ NetworkAccess:
+ networkAccess: true
+baseCommand: bh20-seq-uploader
+arguments: [--skip-qc, $(inputs.metadata), $(inputs.fasta)]