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authorPjotr Prins2020-11-06 09:52:32 +0000
committerPjotr Prins2020-11-06 09:52:32 +0000
commit43d7264dda8061a024befbc9ca0a89d7159b1e40 (patch)
tree2f0792879657ff2105bdfe36b1d9ed6a5bc1f08c /scripts/uthsc_samples/template.yaml
parentfbbec51e604964d18ab72cbf0ac24b102ecc0376 (diff)
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UTHSC upload info
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+id: placeholder
+
+license:
+ license_type: http://creativecommons.org/licenses/by/4.0/
+ title: "$sample_name - $locationx"
+ attribution_name: "Mariah Taylor, Colleen Jonsson"
+ attribution_url: https://www.uthsc.edu/medicine/molecular-sciences/faculty-directory/jonsson.php
+
+host:
+ host_id: "$sample_id"
+ host_species: http://purl.obolibrary.org/obo/NCBITaxon_9606
+
+sample:
+ sample_id: "$sample_id"
+ specimen_source: [http://purl.obolibrary.org/obo/NCIT_C155831]
+ collection_date: "$collection_date"
+ collection_location: $location
+
+virus:
+ virus_species: http://purl.obolibrary.org/obo/NCBITaxon_2697049
+ virus_strain: "$strain"
+
+technology:
+ sample_sequencing_technology: [http://www.ebi.ac.uk/efo/EFO_0008632]
+ sequence_assembly_method: https://bio.tools/BWA#!
+ additional_technology_information: Oxford Nanopore MiniIon RNA long reads
+
+submitter:
+ authors: [Mariah Taylor, Colleen Jonsson]
+ submitter_name: [Mariah Taylor, Colleen B. Jonsson, Pjotr Prins]
+ submitter_address: UTHSC, Memphis, Tennessee 38163, USA
+ originating_lab: Regional Biocontainment Laboratory, Memphis, TN
+ provider_sample_id: $sample_id
+ submitter_sample_id: $sample_id
+ submitter_orcid: [https://orcid.org/0000-0002-2640-7672,https://orcid.org/0000-0002-8021-9162]