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| author | AndreaGuarracino | 2020-09-04 09:59:47 +0200 |
|---|---|---|
| committer | AndreaGuarracino | 2020-09-04 09:59:47 +0200 |
| commit | 842f1a25cc2632771e8a816dbb4898db81d7a6c2 (patch) | |
| tree | 462fa2e7e6c42f7ca0cd054ab15afee109daac30 /scripts/download_genbank_data | |
| parent | 7067de8cfe0607fcae13360b80a3763b86f9664c (diff) | |
| download | bh20-seq-resource-842f1a25cc2632771e8a816dbb4898db81d7a6c2.tar.gz bh20-seq-resource-842f1a25cc2632771e8a816dbb4898db81d7a6c2.tar.lz bh20-seq-resource-842f1a25cc2632771e8a816dbb4898db81d7a6c2.zip | |
synchronized the create_sra_metadata.py script with the latest updates
Diffstat (limited to 'scripts/download_genbank_data')
| -rwxr-xr-x | scripts/download_genbank_data/from_genbank_to_fasta_and_yaml.py | 2 |
1 files changed, 1 insertions, 1 deletions
diff --git a/scripts/download_genbank_data/from_genbank_to_fasta_and_yaml.py b/scripts/download_genbank_data/from_genbank_to_fasta_and_yaml.py index 8f765d7..7251819 100755 --- a/scripts/download_genbank_data/from_genbank_to_fasta_and_yaml.py +++ b/scripts/download_genbank_data/from_genbank_to_fasta_and_yaml.py @@ -6,7 +6,7 @@ parser.add_argument('--ids-to-ignore', type=str, help='file with ids to ignore i parser.add_argument('--skip-request', action='store_true', help='skip metadata and sequence request', required=False) parser.add_argument('--only-missing-ids', action='store_true', help='download only missing ids not already downloaded', required=False) parser.add_argument('--dict-ontology', type=str, help='where is the ontology', - default='../dict_ontology_standardization/',required=False) + default='../dict_ontology_standardization/', required=False) args = parser.parse_args() from Bio import Entrez |