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| author | AndreaGuarracino | 2020-11-12 18:35:00 +0100 |
|---|---|---|
| committer | AndreaGuarracino | 2020-11-12 18:35:00 +0100 |
| commit | 87440554e57d5c5ed846e98a3b3ec428330e15e8 (patch) | |
| tree | f5c02264faac820a91cbe92974f279f5bec10c48 /scripts/download_genbank_data/from_genbank_to_fasta_and_yaml.py | |
| parent | 0bfe144ca40b4dfc1d75e195f3cfae7a8af94dc0 (diff) | |
| download | bh20-seq-resource-87440554e57d5c5ed846e98a3b3ec428330e15e8.tar.gz bh20-seq-resource-87440554e57d5c5ed846e98a3b3ec428330e15e8.tar.lz bh20-seq-resource-87440554e57d5c5ed846e98a3b3ec428330e15e8.zip | |
updated alignment_protocol field in the script, doc, and the example templates
Diffstat (limited to 'scripts/download_genbank_data/from_genbank_to_fasta_and_yaml.py')
| -rwxr-xr-x | scripts/download_genbank_data/from_genbank_to_fasta_and_yaml.py | 2 |
1 files changed, 1 insertions, 1 deletions
diff --git a/scripts/download_genbank_data/from_genbank_to_fasta_and_yaml.py b/scripts/download_genbank_data/from_genbank_to_fasta_and_yaml.py index 364090e..87b348b 100755 --- a/scripts/download_genbank_data/from_genbank_to_fasta_and_yaml.py +++ b/scripts/download_genbank_data/from_genbank_to_fasta_and_yaml.py @@ -190,7 +190,7 @@ for path_metadata_xxx_xml in [os.path.join(dir_metadata, name_metadata_xxx_xml) for info_to_check, field_in_yaml in zip( ['Assembly Method', 'Coverage', 'Sequencing Technology'], - ['sequence_assembly_method', 'sequencing_coverage', 'sample_sequencing_technology'] + ['alignment_protocol', 'sequencing_coverage', 'sample_sequencing_technology'] ): if info_to_check in GBSeq_comment_text: tech_info_to_parse = GBSeq_comment_text.split('{} :: '.format(info_to_check))[1].split(' ;')[0] |