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authorAndreaGuarracino2020-09-04 12:34:54 +0200
committerAndreaGuarracino2020-09-04 12:34:54 +0200
commitc754aab95f47317228a07ccbe3818780aa22a52a (patch)
treec6c067f20d41eb8259e04c8709569d05f7ff6f5b /scripts/create_sra_metadata
parent8417375cd86c6ba2f29511964544a267ed883ccd (diff)
downloadbh20-seq-resource-c754aab95f47317228a07ccbe3818780aa22a52a.tar.gz
bh20-seq-resource-c754aab95f47317228a07ccbe3818780aa22a52a.tar.lz
bh20-seq-resource-c754aab95f47317228a07ccbe3818780aa22a52a.zip
fixed bugs in in index management and type conversion
Diffstat (limited to 'scripts/create_sra_metadata')
-rw-r--r--scripts/create_sra_metadata/create_sra_metadata.py2
1 files changed, 1 insertions, 1 deletions
diff --git a/scripts/create_sra_metadata/create_sra_metadata.py b/scripts/create_sra_metadata/create_sra_metadata.py
index 8866d01..b872896 100644
--- a/scripts/create_sra_metadata/create_sra_metadata.py
+++ b/scripts/create_sra_metadata/create_sra_metadata.py
@@ -198,7 +198,7 @@ for i, EXPERIMENT_PACKAGE in enumerate(EXPERIMENT_PACKAGE_SET):
missing_value_list.append('\t'.join([accession, 'host_sex', VALUE_text]))
elif TAG_text in ['host_age', 'host age']:
if is_integer(VALUE_text):
- info_for_yaml_dict['host']['host_age'] = VALUE_text
+ info_for_yaml_dict['host']['host_age'] = int(VALUE_text)
info_for_yaml_dict['host']['host_age_unit'] = 'http://purl.obolibrary.org/obo/UO_0000036'
elif TAG_text == 'collected_by':
if VALUE_text.lower() not in ['not available', 'missing']: