Adding upload metadata examples

1 files changed, 39 insertions, 0 deletions

diff --git a/example/uthsc_example.yaml b/example/uthsc_example.yaml
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+id: placeholder
+
+license:
+    license_type: http://creativecommons.org/licenses/by/4.0/
+    title: "Sample"
+    attribution_name: "Mariah Taylor, Colleen Jonsson"
+    attribution_url: https://www.uthsc.edu/rbl/
+
+host:
+    host_id: TN_UT2
+    host_species: http://purl.obolibrary.org/obo/NCBITaxon_9606
+    additional_host_information: Optional free text field for additional information
+
+sample:
+    sample_id: TN_UT2
+    specimen_source: [http://purl.obolibrary.org/obo/NCIT_C155831]
+    collection_date: "2020-04-26"
+    collection_location: https://www.wikidata.org/wiki/Q3289517
+    additional_collection_information: Optional free text field for additional information
+
+virus:
+    virus_species: http://purl.obolibrary.org/obo/NCBITaxon_2697049
+    virus_strain: SARS-CoV-2/human/USA/AL_UT14/2020
+
+technology:
+    sample_sequencing_technology: [http://www.ebi.ac.uk/efo/EFO_0008632] // Nanopore MinION
+    sequence_assembly_method: guppy
+    additional_technology_information: Optional free text field for additional information
+
+submitter:
+    authors: [Mariah Taylor, Colleen Jonsson]
+    submitter_name: [Mariah Taylor]
+    submitter_address: UTHSC, Memphis, Tennessee 38163, USA
+    originating_lab: Regional Biocontainment Laboratory
+    provider_sample_id: XXX1
+    submitter_sample_id: XXX2
+    publication: PMID00001113
+    submitter_orcid: [https://orcid.org/0000-0000-0000-0000,https://orcid.org/0000-0000-0000-0001]
+    additional_submitter_information: Optional free text field for additional information