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| author | AndreaGuarracino | 2020-08-27 00:18:24 +0200 |
|---|---|---|
| committer | AndreaGuarracino | 2020-08-27 00:18:24 +0200 |
| commit | 4299c750728bbad4bdbf0311ff2a4b9c65d9883c (patch) | |
| tree | 07515a9ad6d07eca22853806f879fb39d2375c09 /doc | |
| parent | b69b8560132786e16ea6a997d65fd8c43381cc03 (diff) | |
| download | bh20-seq-resource-4299c750728bbad4bdbf0311ff2a4b9c65d9883c.tar.gz bh20-seq-resource-4299c750728bbad4bdbf0311ff2a4b9c65d9883c.tar.lz bh20-seq-resource-4299c750728bbad4bdbf0311ff2a4b9c65d9883c.zip | |
updated dependency from clustalw to minimap2; the genbank script no longer creates YAML/FASTA pairs for too short sequences
Diffstat (limited to 'doc')
| -rw-r--r-- | doc/INSTALL.md | 2 |
1 files changed, 1 insertions, 1 deletions
diff --git a/doc/INSTALL.md b/doc/INSTALL.md index 3b270dd..e31b7d7 100644 --- a/doc/INSTALL.md +++ b/doc/INSTALL.md @@ -59,7 +59,7 @@ WIP: add gunicorn container Currently the full webserver container deploy command looks like ``` -penguin2:~/iwrk/opensource/code/vg/bh20-seq-resource$ env GUIX_PACKAGE_PATH=~/iwrk/opensource/guix/guix-oinformatics/ ~/iwrk/opensource/guix/guix/pre-inst-env guix environment -C guix --ad-hoc git python python-flask python-pyyaml python-pycurl python-magic nss-certs python-pyshex python-pyyaml --network openssl python-pyshex python-pyshexc clustalw python-schema-salad python-arvados-python-client --share=/export/tmp -- env TMPDIR=/export/tmp FLASK_ENV=development FLASK_APP=bh20simplewebuploader/main.py flask run +penguin2:~/iwrk/opensource/code/vg/bh20-seq-resource$ env GUIX_PACKAGE_PATH=~/iwrk/opensource/guix/guix-oinformatics/ ~/iwrk/opensource/guix/guix/pre-inst-env guix environment -C guix --ad-hoc git python python-flask python-pyyaml python-pycurl python-magic nss-certs python-pyshex python-pyyaml --network openssl python-pyshex python-pyshexc minimap2 python-schema-salad python-arvados-python-client --share=/export/tmp -- env TMPDIR=/export/tmp FLASK_ENV=development FLASK_APP=bh20simplewebuploader/main.py flask run ``` Note: see above on GUIX_PACKAGE_PATH. |