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| author | Peter Amstutz | 2020-04-10 16:11:29 -0400 |
|---|---|---|
| committer | Peter Amstutz | 2020-04-10 16:12:00 -0400 |
| commit | 1b1283131f3c684bfff2c1b165565957ac01b4be (patch) | |
| tree | 34afd601783b90fa62ae7f7ca369555bd8b8cbab /bh20sequploader | |
| parent | 1f66b8270a7bf06f98e2a336385bc84b778ead66 (diff) | |
| download | bh20-seq-resource-1b1283131f3c684bfff2c1b165565957ac01b4be.tar.gz bh20-seq-resource-1b1283131f3c684bfff2c1b165565957ac01b4be.tar.lz bh20-seq-resource-1b1283131f3c684bfff2c1b165565957ac01b4be.zip | |
Fix swapped fasta/fastq
Replace example sequence with COV19 reference instead of HIV.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Diffstat (limited to 'bh20sequploader')
| -rw-r--r-- | bh20sequploader/qc_fasta.py | 4 |
1 files changed, 2 insertions, 2 deletions
diff --git a/bh20sequploader/qc_fasta.py b/bh20sequploader/qc_fasta.py index e3d4fe7..e47d66b 100644 --- a/bh20sequploader/qc_fasta.py +++ b/bh20sequploader/qc_fasta.py @@ -21,8 +21,8 @@ def qc_fasta(sequence): raise ValueError("FASTA file contains multiple entries") break sequence.seek(0) - return "reads.fastq" - elif seq_type == "text/fastq": return "sequence.fasta" + elif seq_type == "text/fastq": + return "reads.fastq" else: raise ValueError("Sequence file does not look like FASTA or FASTQ") |