aboutsummaryrefslogtreecommitdiff
path: root/bh20sequploader
diff options
context:
space:
mode:
authorlltommy2020-04-09 14:34:54 +0200
committerlltommy2020-04-09 14:34:54 +0200
commitd7498093d0f5e0db052ef88815d57c2648d09425 (patch)
tree7fcea4dd7986a34296917d3091e90e7c4ce8a98e /bh20sequploader
parent9458ed33da08c787c4bb20af7b4108c93334b351 (diff)
downloadbh20-seq-resource-d7498093d0f5e0db052ef88815d57c2648d09425.tar.gz
bh20-seq-resource-d7498093d0f5e0db052ef88815d57c2648d09425.tar.lz
bh20-seq-resource-d7498093d0f5e0db052ef88815d57c2648d09425.zip
Updating schema and examples. This is still work in progress but we get there
Diffstat (limited to 'bh20sequploader')
-rw-r--r--bh20sequploader/bh20seq-schema.yml60
1 files changed, 42 insertions, 18 deletions
diff --git a/bh20sequploader/bh20seq-schema.yml b/bh20sequploader/bh20seq-schema.yml
index 6e0973a..38cfb48 100644
--- a/bh20sequploader/bh20seq-schema.yml
+++ b/bh20sequploader/bh20seq-schema.yml
@@ -1,36 +1,60 @@
$graph:
-- name: sampleInformationSchema
+- name: hostSchema
type: record
fields:
- location: string
- host: string
- sequenceTechnology: string
- assemblyMethod: string
+ host_id: string
+ host_species: string
+ host_common_name: string?
+ host_sex: string?
+ host_age: int?
+ host_age_unit: string?
+ host_health_status: string?
+ host_treatment: string?
+ additional_host_information: string?
-- name: InstituteInformationSchema
+- name: sampleSchema
type: record
fields:
- OriginatingLab: string
- SubmittingLab: string
+ collector_name: string
+ collecting_institution: string
+ specimen_source: string?
+ collection_date: string?
+ collection_location: string?
+ sample_storage_conditions: string?
+ additional_collection_information: string?
-- name: SubmitterInformationSchema
+- name: virusSchema
type: record
fields:
- Submitter: string
- submissionDate: string
+ virus_species: string?
+ virus_strain: string?
-- name: VirusDetailSchema
+- name: technologySchema
type: record
fields:
- VirusName: string
- AccessionId: string
+ sample_sequencing_technology: string
+ sequence_assembly_method: string?
+ sequencing_coverage: string?
+
+- name: submitterSchema
+ type: record
+ fields:
+ submitter_name: string
+ submitter_address: string?
+ originating_lab: string
+ lab_address: string?
+ provider_sample_id: string?
+ submitter_sample_id: string?
+ authors: string?
+ submitter_id: string?
- name: MainSchema
type: record
documentRoot: true
fields:
- sampleInformation: sampleInformationSchema
- InstituteInformation: InstituteInformationSchema
- SubmitterInformation: SubmitterInformationSchema
- VirusDetail: VirusDetailSchema
+ host: hostSchema
+ sample: sampleSchema
+ virus: virusSchema?
+ technology: technologySchema
+ submitter: submitterSchema \ No newline at end of file