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authorAndreaGuarracino2020-09-04 12:34:54 +0200
committerAndreaGuarracino2020-09-04 12:34:54 +0200
commitc754aab95f47317228a07ccbe3818780aa22a52a (patch)
treec6c067f20d41eb8259e04c8709569d05f7ff6f5b /bh20sequploader/main.py
parent8417375cd86c6ba2f29511964544a267ed883ccd (diff)
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fixed bugs in in index management and type conversion
Diffstat (limited to 'bh20sequploader/main.py')
-rw-r--r--bh20sequploader/main.py4
1 files changed, 2 insertions, 2 deletions
diff --git a/bh20sequploader/main.py b/bh20sequploader/main.py
index 314a2ea..f8127af 100644
--- a/bh20sequploader/main.py
+++ b/bh20sequploader/main.py
@@ -47,8 +47,8 @@ def qc_stuff(metadata, sequence_p1, sequence_p2, do_qc=True):
raise ValueError("It is possible to upload just one FASTA file at a time")
target.append(qc_fasta(sequence_p2))
- target[0] = ("reads_1."+target[0][0][6:], target[0][1])
- target[1] = ("reads_2."+target[1][0][6:], target[0][1])
+ target[0] = ("reads_1."+target[0][0][6:], target[0][1], target[0][2])
+ target[1] = ("reads_2."+target[1][0][6:], target[1][1], target[1][2])
if do_qc and target[0][2] == 'text/fasta' and sample_id != target[0][1]:
raise ValueError("The sample_id field in the metadata must be the same as the FASTA header")