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| author | Peter Amstutz | 2020-04-20 12:50:03 -0400 |
|---|---|---|
| committer | Peter Amstutz | 2020-04-20 12:50:03 -0400 |
| commit | 1219eaf496c899f3043b90e30eb956f0f363bfb3 (patch) | |
| tree | a0735d5df88e608c5461d5b3cb9a3c6bb2f0f32e /bh20sequploader/bh20seq-shex.rdf | |
| parent | a2d19fa7b34170abab3759cdff14d8b052178a8a (diff) | |
| download | bh20-seq-resource-1219eaf496c899f3043b90e30eb956f0f363bfb3.tar.gz bh20-seq-resource-1219eaf496c899f3043b90e30eb956f0f363bfb3.tar.lz bh20-seq-resource-1219eaf496c899f3043b90e30eb956f0f363bfb3.zip | |
Add ShEx validation
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Diffstat (limited to 'bh20sequploader/bh20seq-shex.rdf')
| -rw-r--r-- | bh20sequploader/bh20seq-shex.rdf | 59 |
1 files changed, 59 insertions, 0 deletions
diff --git a/bh20sequploader/bh20seq-shex.rdf b/bh20sequploader/bh20seq-shex.rdf new file mode 100644 index 0000000..8d3f5fc --- /dev/null +++ b/bh20sequploader/bh20seq-shex.rdf @@ -0,0 +1,59 @@ +PREFIX : <https://raw.githubusercontent.com/arvados/bh20-seq-resource/master/bh20sequploader/bh20seq-shex.rdf#> +PREFIX MainSchema: <http://biohackathon.org/bh20-seq-schema#MainSchema/> +PREFIX hostSchema: <http://biohackathon.org/bh20-seq-schema#hostSchema/> +PREFIX xsd: <http://www.w3.org/2001/XMLSchema#> +PREFIX obo: <http://purl.obolibrary.org/obo/> +PREFIX sio: <http://semanticscience.org/resource/> +PREFIX efo: <http://www.ebi.ac.uk/efo/> +PREFIX evs: <http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#> +PREFIX edam: <http://edamontology.org/> + +:submissionShape { + MainSchema:host @:hostShape ; + MainSchema:sample @:sampleShape ; + MainSchema:submitter @:submitterShape ; + MainSchema:technology @:technologyShape ; + MainSchema:virus @:virusShape; +} + +:hostShape { + efo:EFO_0000532 [ obo:NCBITaxon_~ ] ; + obo:PATO_0000047 [ obo:NCIT_C20197 obo:NCIT_C27993 obo:NCIT_C17998 ] ; + sio:SIO_000115 xsd:string ; + obo:PATO_0000011 xsd:integer ?; + obo:NCIT_C42574 [ obo:UO_~ ] ?; + sio:SIO_001167 xsd:string ?; + efo:EFO_0000727 xsd:string ?; +} + +:sampleShape { + obo:OBI_0001895 xsd:string ; + sio:SIO_000115 xsd:string ; + sio:SIO_001167 xsd:string ; + evs:C25164 xsd:string ?; + obo:GAZ_00000448 [obo:GAZ_~] ?; + obo:OBI_0001472 xsd:string ?; + obo:OBI_0001479 xsd:string ?; +} + +:submitterShape { + sio:SIO_000116 xsd:string ; + obo:NCIT_C37984 xsd:string ; + obo:NCIT_C37900 xsd:string ?; + obo:NCIT_C42781 xsd:string ?; + obo:OBI_0600047 xsd:string ?; + sio:SIO_000115 /https:\u002F\u002Forcid.org\u002F.{4}-.{4}-.{4}-.{4}/?; + sio:SIO_000172 xsd:string ?; + efo:EFO_0001741 xsd:string ?; +} + +:technologyShape { + obo:OBI_0600047 xsd:string ; + obo:FLU_0000848 xsd:integer ?; + efo:EFO_0002699 xsd:string ?; +} + +:virusShape{ + edam:data_1875 [ obo:NCBITaxon_~ ] ; + sio:SIO_010055 xsd:string ?; +}
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