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authorPjotr Prins2020-04-13 08:21:56 -0500
committerPjotr Prins2020-04-13 08:21:56 -0500
commit05c351d0a8059c06f91b88e9beec6e5720bac005 (patch)
tree7b92377a95e72c543428023776d43c98ffc9f593 /bh20sequploader/bh20seq-schema.yml
parente00caedf7d3e86879f0230f08b0b4c448474b502 (diff)
parent51fc61bae3ed2eae9719c1aabf959d47468724b2 (diff)
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Merge branch 'master' of github.com:arvados/bh20-seq-resource
Diffstat (limited to 'bh20sequploader/bh20seq-schema.yml')
-rw-r--r--bh20sequploader/bh20seq-schema.yml10
1 files changed, 7 insertions, 3 deletions
diff --git a/bh20sequploader/bh20seq-schema.yml b/bh20sequploader/bh20seq-schema.yml
index 81a7f22..2d2e4c9 100644
--- a/bh20sequploader/bh20seq-schema.yml
+++ b/bh20sequploader/bh20seq-schema.yml
@@ -13,11 +13,11 @@ $graph:
type: record
fields:
host_species:
- ## autocomplete # NCBITAXON
doc: Host species as defined in NCBITaxon (e.g. http://purl.obolibrary.org/obo/NCBITaxon_9606 for Homo sapiens)
type: string
jsonldPredicate:
_id: http://www.ebi.ac.uk/efo/EFO_0000532
+ _type: "@id"
host_id:
doc: Identifer for the host. If you submit multiple samples from the same host, use the same host_id for those samples
type: string
@@ -33,16 +33,18 @@ $graph:
type: string
jsonldPredicate:
_id: http://purl.obolibrary.org/obo/PATO_0000047
+ _type: "@id"
host_age:
doc: Age of the host as number (e.g. 50)
type: int?
jsonldPredicate:
_id: http://purl.obolibrary.org/obo/PATO_0000011
host_age_unit:
- doc: Unit of host age.... this field is unstable as of now (might be removed)
+ doc: Unit of host age e.g. http://purl.obolibrary.org/obo/UO_0000036
type: string?
jsonldPredicate:
- _id: http://purl.obolibrary.org/obo/UO_0000036
+ _id: http://purl.obolibrary.org/obo/NCIT_C42574
+ _type: "@id"
host_health_status:
doc: A condition or state at a particular time
type: string?
@@ -91,6 +93,7 @@ $graph:
type: string?
jsonldPredicate:
_id: http://purl.obolibrary.org/obo/GAZ_00000448
+ _type: "@id"
sample_storage_conditions:
doc: Information aboout storage of a specified type, e.g. frozen specimen, paraffin, fresh ....
type: string?
@@ -120,6 +123,7 @@ $graph:
type: string?
jsonldPredicate:
_id: http://edamontology.org/data_1875
+ _type: "@id"
virus_strain:
doc: Name of the virus strain
type: string?