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authorlltommy2020-04-28 20:31:42 +0200
committerlltommy2020-04-28 20:31:42 +0200
commit6032a373003affa641ca1e70a44c29a232b5b3ed (patch)
tree3621db63632ec830c64e6ee687691a33932ddeb3 /bh20sequploader/bh20seq-options.yml
parent5da793a8715f5b0b231ea4d531f030ed04bc878c (diff)
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Changes to the structure - we use lists now instead of strings where it makes sense. This allows us to have multiple values where in makes sense
Diffstat (limited to 'bh20sequploader/bh20seq-options.yml')
-rw-r--r--bh20sequploader/bh20seq-options.yml30
1 files changed, 0 insertions, 30 deletions
diff --git a/bh20sequploader/bh20seq-options.yml b/bh20sequploader/bh20seq-options.yml
index 104ed6c..c553f41 100644
--- a/bh20sequploader/bh20seq-options.yml
+++ b/bh20sequploader/bh20seq-options.yml
@@ -35,38 +35,8 @@ sample_sequencing_technology:
Oxford Nanopore Sequencing: http://purl.obolibrary.org/obo/NCIT_C146818
Sanger dideoxy sequencing: http://purl.obolibrary.org/obo/NCIT_C19641
-sample_sequencing_technology2:
- Illumina NextSeq 500: http://www.ebi.ac.uk/efo/EFO_0009173
- Illumina NextSeq 550: http://www.ebi.ac.uk/efo/EFO_0008566
- Illumina HiSeq X: http://www.ebi.ac.uk/efo/EFO_0008567
- Illumina MiSeq: http://www.ebi.ac.uk/efo/EFO_0004205
- Illumina: http://purl.obolibrary.org/obo/OBI_0000759
- IonTorrent: http://purl.obolibrary.org/obo/NCIT_C125894
- Ion Semiconductor Sequencing: http://purl.obolibraryorg/obo/NCIT_C125894
- Oxford Nanopore MinION: http://www.ebi.ac.uk/efo/EFO_0008632
- Oxford Nanopore Sequencing: http://purl.obolibrary.org/obo/NCIT_C146818
- Sanger dideoxy sequencing: http://purl.obolibrary.org/obo/NCIT_C19641
-
-sample_sequencing_technology3:
- Illumina NextSeq 500: http://www.ebi.ac.uk/efo/EFO_0009173
- Illumina NextSeq 550: http://www.ebi.ac.uk/efo/EFO_0008566
- Illumina HiSeq X: http://www.ebi.ac.uk/efo/EFO_0008567
- Illumina MiSeq: http://www.ebi.ac.uk/efo/EFO_0004205
- Illumina: http://purl.obolibrary.org/obo/OBI_0000759
- IonTorrent: http://purl.obolibrary.org/obo/NCIT_C125894
- Ion Semiconductor Sequencing: http://purl.obolibraryorg/obo/NCIT_C125894
- Oxford Nanopore MinION: http://www.ebi.ac.uk/efo/EFO_0008632
- Oxford Nanopore Sequencing: http://purl.obolibrary.org/obo/NCIT_C146818
- Sanger dideoxy sequencing: http://purl.obolibrary.org/obo/NCIT_C19641
-
specimen_source:
nasopharyngeal swab: http://purl.obolibrary.org/obo/NCIT_C155831
oropharyngeal swab: http://purl.obolibrary.org/obo/NCIT_C155835
sputum: http://purl.obolibrary.org/obo/NCIT_C13278
bronchoalveolar lavage fluid: http://purl.obolibrary.org/obo/NCIT_C13195
-
-specimen_source2:
- nasopharyngeal swab: http://purl.obolibrary.org/obo/NCIT_C155831
- oropharyngeal swab: http://purl.obolibrary.org/obo/NCIT_C155835
- sputum: http://purl.obolibrary.org/obo/NCIT_C13278
- bronchoalveolar lavage fluid: http://purl.obolibrary.org/obo/NCIT_C13195