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| author | lltommy | 2020-04-19 19:47:39 +0200 |
|---|---|---|
| committer | lltommy | 2020-04-19 19:47:39 +0200 |
| commit | 47666ab547da0c2fbdc2026f955d7d7b615d11fb (patch) | |
| tree | 337161e1474ee0c80bae1245e4bd6100f65f0654 /bh20sequploader/bh20seq-options.yml | |
| parent | 6d477eedd556c0adfc16cdd0ecd67a5144362dcf (diff) | |
| download | bh20-seq-resource-47666ab547da0c2fbdc2026f955d7d7b615d11fb.tar.gz bh20-seq-resource-47666ab547da0c2fbdc2026f955d7d7b615d11fb.tar.lz bh20-seq-resource-47666ab547da0c2fbdc2026f955d7d7b615d11fb.zip | |
Updating NCBI dictonaries, adding UI options, small yaml schema changes
Diffstat (limited to 'bh20sequploader/bh20seq-options.yml')
| -rw-r--r-- | bh20sequploader/bh20seq-options.yml | 41 |
1 files changed, 37 insertions, 4 deletions
diff --git a/bh20sequploader/bh20seq-options.yml b/bh20sequploader/bh20seq-options.yml index d05be5a..da47e1a 100644 --- a/bh20sequploader/bh20seq-options.yml +++ b/bh20sequploader/bh20seq-options.yml @@ -11,7 +11,40 @@ host_age_unit: Hours: http://purl.obolibrary.org/obo/UO_0000032 host_sex: - Male: http://purl.obolibrary.org/obo/NCIT_C20197 - Female: http://purl.obolibrary.org/obo/NCIT_C27993 - Intersex: http://purl.obolibrary.org/obo/NCIT_C45908 - Unknown: http://purl.obolibrary.org/obo/NCIT_C17998 + Male: http://purl.obolibrary.org/obo/PATO_0000384 + Female: http://purl.obolibrary.org/obo/PATO_0000383 + +sample_sequencing_technology: + Illumina NextSeq 500: http://www.ebi.ac.uk/efo/EFO_0009173 + Illumina NextSeq 550: http://www.ebi.ac.uk/efo/EFO_0008566 + Illumina HiSeq X: http://www.ebi.ac.uk/efo/EFO_0008567 + Illumina MiSeq: http://www.ebi.ac.uk/efo/EFO_0004205 + Illumina: http://purl.obolibrary.org/obo/OBI_0000759 + IonTorrent: http://purl.obolibrary.org/obo/NCIT_C125894 + Oxford Nanopore MinION: http://www.ebi.ac.uk/efo/EFO_0008632 + Oxford Nanopore Sequencing: http://purl.obolibrary.org/obo/NCIT_C146818 + Sanger dideoxy sequencing: http://purl.obolibrary.org/obo/NCIT_C19641 + +sample_sequencing_technology2: + Illumina NextSeq 500: http://www.ebi.ac.uk/efo/EFO_0009173 + Illumina NextSeq 550: http://www.ebi.ac.uk/efo/EFO_0008566 + Illumina HiSeq X: http://www.ebi.ac.uk/efo/EFO_0008567 + Illumina MiSeq: http://www.ebi.ac.uk/efo/EFO_0004205 + Illumina: http://purl.obolibrary.org/obo/OBI_0000759 + IonTorrent: http://purl.obolibrary.org/obo/NCIT_C125894 + Ion Semiconductor Sequencing: http://purl.obolibraryorg/obo/NCIT_C125894 + Oxford Nanopore MinION: http://www.ebi.ac.uk/efo/EFO_0008632 + Oxford Nanopore Sequencing: http://purl.obolibrary.org/obo/NCIT_C146818 + Sanger dideoxy sequencing: http://purl.obolibrary.org/obo/NCIT_C19641 + +specimen_source: + nasopharyngeal swab: http://purl.obolibrary.org/obo/NCIT_C155831 + oropharyngeal swab: http://purl.obolibrary.org/obo/NCIT_C155835 + sputum: http://purl.obolibrary.org/obo/NCIT_C13278 + bronchoalveolar lavage fluid: http://purl.obolibrary.org/obo/NCIT_C13195 + +specimen_source2: + nasopharyngeal swab: http://purl.obolibrary.org/obo/NCIT_C155831 + oropharyngeal swab: http://purl.obolibrary.org/obo/NCIT_C155835 + sputum: http://purl.obolibrary.org/obo/NCIT_C13278 + bronchoalveolar lavage fluid: http://purl.obolibrary.org/obo/NCIT_C13195 |