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| author | Peter Amstutz | 2020-05-14 21:30:19 -0400 |
|---|---|---|
| committer | Peter Amstutz | 2020-05-14 21:30:19 -0400 |
| commit | 79a85f846671d575eae6f83d96659c0e1be06011 (patch) | |
| tree | 3a5ae32a96eae3cd129ab3b350043ab0a4e6761f /bh20seqanalyzer | |
| parent | 9f901a09a6f5ac95d6875c9e0b435ea9b62fc0f9 (diff) | |
| download | bh20-seq-resource-79a85f846671d575eae6f83d96659c0e1be06011.tar.gz bh20-seq-resource-79a85f846671d575eae6f83d96659c0e1be06011.tar.lz bh20-seq-resource-79a85f846671d575eae6f83d96659c0e1be06011.zip | |
Switch fasta identifiers to use a real working URL
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Diffstat (limited to 'bh20seqanalyzer')
| -rw-r--r-- | bh20seqanalyzer/main.py | 2 |
1 files changed, 1 insertions, 1 deletions
diff --git a/bh20seqanalyzer/main.py b/bh20seqanalyzer/main.py index 07e5f69..28b5e31 100644 --- a/bh20seqanalyzer/main.py +++ b/bh20seqanalyzer/main.py @@ -146,7 +146,7 @@ def start_pangenome_analysis(api, "class": "File", "location": "keep:%s/metadata.yaml" % v["portable_data_hash"] }) - inputobj["subjects"].append("http://arvados.org/keep:%s/sequence.fasta" % v["portable_data_hash"]) + inputobj["subjects"].append("http://collections.lugli.arvadosapi.com/c=%s/sequence.fasta" % v["portable_data_hash"]) run_workflow(api, analysis_project, pangenome_workflow_uuid, "Pangenome analysis", inputobj) |