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| author | Peter Amstutz | 2020-04-10 16:47:31 -0400 |
|---|---|---|
| committer | Peter Amstutz | 2020-04-10 16:47:31 -0400 |
| commit | ffad8c21f08aca1cf65809c398f3613846e7c8ba (patch) | |
| tree | 989ebfcb978072d04be0c0cee8155976b4d1b67b /bh20seqanalyzer/main.py | |
| parent | f2a3aeb6d7d8ba210d060b83ea46475eab3626ac (diff) | |
| download | bh20-seq-resource-ffad8c21f08aca1cf65809c398f3613846e7c8ba.tar.gz bh20-seq-resource-ffad8c21f08aca1cf65809c398f3613846e7c8ba.tar.lz bh20-seq-resource-ffad8c21f08aca1cf65809c398f3613846e7c8ba.zip | |
Propagating metadata to output works now.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Diffstat (limited to 'bh20seqanalyzer/main.py')
| -rw-r--r-- | bh20seqanalyzer/main.py | 4 |
1 files changed, 2 insertions, 2 deletions
diff --git a/bh20seqanalyzer/main.py b/bh20seqanalyzer/main.py index 63ff067..193a268 100644 --- a/bh20seqanalyzer/main.py +++ b/bh20seqanalyzer/main.py @@ -29,7 +29,7 @@ def validate_upload(api, collection, validated_project, else: try: metadata_content = ruamel.yaml.round_trip_load(col.open("metadata.yaml")) - metadata_content["id"] = "keep:%s/metadata.yaml" % collection["portable_data_hash"] + metadata_content["id"] = "http://arvados.org/keep:%s/metadata.yaml" % collection["portable_data_hash"] add_lc_filename(metadata_content, metadata_content["id"]) valid = qc_metadata(metadata_content) and valid except Exception as e: @@ -146,7 +146,7 @@ def start_pangenome_analysis(api, "class": "File", "location": "keep:%s/metadata.yaml" % v["portable_data_hash"] }) - inputobj["subjects"].append("keep:%s/sequence.fasta" % v["portable_data_hash"]) + inputobj["subjects"].append("http://arvados.org/keep:%s/sequence.fasta" % v["portable_data_hash"]) run_workflow(api, analysis_project, pangenome_workflow_uuid, "Pangenome analysis", inputobj) |