diff options
| author | lltommy | 2020-11-11 09:54:56 +0100 |
|---|---|---|
| committer | lltommy | 2020-11-11 09:54:56 +0100 |
| commit | c5fe5de7e4c77bfb48b1ae2f662c2d9cc120c06e (patch) | |
| tree | 5d2265d266958fe52b7e32e97d6ec0226d0a495e | |
| parent | 7e3509fed5c2824f1eeb6c6d2debfbd5f68f691d (diff) | |
| download | bh20-seq-resource-c5fe5de7e4c77bfb48b1ae2f662c2d9cc120c06e.tar.gz bh20-seq-resource-c5fe5de7e4c77bfb48b1ae2f662c2d9cc120c06e.tar.lz bh20-seq-resource-c5fe5de7e4c77bfb48b1ae2f662c2d9cc120c06e.zip | |
restricting specimen_source to obo:NCIT which would have prevented the ncbi taxon bug
| -rw-r--r-- | bh20sequploader/bh20seq-options.yml | 2 | ||||
| -rw-r--r-- | bh20sequploader/bh20seq-shex.rdf | 4 |
2 files changed, 4 insertions, 2 deletions
diff --git a/bh20sequploader/bh20seq-options.yml b/bh20sequploader/bh20seq-options.yml index d1ea398..02b7377 100644 --- a/bh20sequploader/bh20seq-options.yml +++ b/bh20sequploader/bh20seq-options.yml @@ -44,3 +44,5 @@ specimen_source: oropharyngeal swab: http://purl.obolibrary.org/obo/NCIT_C155835 sputum: http://purl.obolibrary.org/obo/NCIT_C13278 bronchoalveolar lavage fluid: http://purl.obolibrary.org/obo/NCIT_C13195 + saliva: http://purlobolibrary.org/obo/NCIT_C13275 + aspirate: http://purl.obolibrary.org/obo/NCIT_C13347 diff --git a/bh20sequploader/bh20seq-shex.rdf b/bh20sequploader/bh20seq-shex.rdf index 89ecd00..6139e55 100644 --- a/bh20sequploader/bh20seq-shex.rdf +++ b/bh20sequploader/bh20seq-shex.rdf @@ -30,7 +30,7 @@ PREFIX wikidata: <http://www.wikidata.org/entity/> efo:EFO_0000727 xsd:string ?; obo:VO_0000002 xsd:string {0,10}; sio:SIO_001167 xsd:string ?; - sio:SIO_001014 [ obo:HANCESTRO_~ ] ? ; #ethnicity + sio:SIO_001014 [ obo:HANCESTRO_~ ] ? ; #ethnicity from obo:HANCESTRO } :sampleShape { @@ -39,7 +39,7 @@ PREFIX wikidata: <http://www.wikidata.org/entity/> obo:GAZ_00000448 [wikidata:~] ; obo:OBI_0001895 xsd:string ?; obo:NCIT_C41206 xsd:string ?; - obo:OBI_0001479 IRI {0,2}; + obo:OBI_000147 [ obo:NCIT_~ ] ? ; #specimen source from obo:NCIT obo:OBI_0001472 xsd:string ?; sio:SIO_001167 xsd:string ?; edam:data_2091 IRI {0,3}; |