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author | Pjotr Prins | 2020-11-06 10:31:56 +0000 |
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committer | Pjotr Prins | 2020-11-06 10:31:56 +0000 |
commit | 951ebe949d88cdbfed028e0a2a420ce7921c3919 (patch) | |
tree | c0127ac7e4446d33deb2dc7f03114a9a934bace0 | |
parent | 039ad90b1627464b687adddb08cf489dca3c5fbc (diff) | |
download | bh20-seq-resource-951ebe949d88cdbfed028e0a2a420ce7921c3919.tar.gz bh20-seq-resource-951ebe949d88cdbfed028e0a2a420ce7921c3919.tar.lz bh20-seq-resource-951ebe949d88cdbfed028e0a2a420ce7921c3919.zip |
Countries
-rw-r--r-- | scripts/db_enrichment/input_location.csv | 21 | ||||
-rw-r--r-- | scripts/uthsc_samples/uthsc_samples.py | 12 | ||||
-rw-r--r-- | semantic_enrichment/countries.ttl | 75 |
3 files changed, 80 insertions, 28 deletions
diff --git a/scripts/db_enrichment/input_location.csv b/scripts/db_enrichment/input_location.csv index eb5322a..a4246cd 100644 --- a/scripts/db_enrichment/input_location.csv +++ b/scripts/db_enrichment/input_location.csv @@ -1,5 +1,16 @@ -http://www.wikidata.org/entity/Q3289517 -http://www.wikidata.org/entity/Q79663 -http://www.wikidata.org/entity/Q2145339 -http://www.wikidata.org/entity/Q23197 -http://www.wikidata.org/entity/Q494755 +http://www.wikidata.org/entity/Q7960498 +http://www.wikidata.org/entity/Q692895 +http://www.wikidata.org/entity/Q928 +http://www.wikidata.org/entity/Q2722074 +http://www.wikidata.org/entity/Q25622187 +http://www.wikidata.org/entity/Q27684996 +http://www.wikidata.org/entity/Q2757125 +http://www.wikidata.org/entity/Q1922283 +http://www.wikidata.org/entity/Q490 +http://www.wikidata.org/entity/Q677037 +http://www.wikidata.org/entity/Q3037 +http://www.wikidata.org/entity/Q843 +http://www.wikidata.org/entity/Q183 +http://www.wikidata.org/entity/Q29 +http://www.wikidata.org/entity/Q17 +http://www.wikidata.org/entity/Q810 diff --git a/scripts/uthsc_samples/uthsc_samples.py b/scripts/uthsc_samples/uthsc_samples.py index c18c07a..3ad2561 100644 --- a/scripts/uthsc_samples/uthsc_samples.py +++ b/scripts/uthsc_samples/uthsc_samples.py @@ -32,13 +32,13 @@ for index, row in table.iterrows(): sample_name = sample collection_date = parse(str(row['Collection Date'])).strftime('%Y-%m-%d') locationx = row['City']+", "+row['State']+", USA" - location = "http://www.wikidata.org/enitity/Q16563" # Memphis by default + location = "http://www.wikidata.org/entity/Q16563" # Memphis by default map = { - "Pegram": "http://www.wikidata.org/enitity/Q3289517", - "Alexander": "http://www.wikidata.org/enitity/Q79663", - "Smithville": "http://www.wikidata.org/enitity/Q2145339", - "Nashville": "http://www.wikidata.org/enitity/Q23197", - "Madison": "http://www.wikidata.org/enitity/Q494755" + "Pegram": "http://www.wikidata.org/entity/Q3289517", + "Alexander": "http://www.wikidata.org/entity/Q79663", + "Smithville": "http://www.wikidata.org/entity/Q2145339", + "Nashville": "http://www.wikidata.org/entity/Q23197", + "Madison": "http://www.wikidata.org/entity/Q494755" } for name in map: diff --git a/semantic_enrichment/countries.ttl b/semantic_enrichment/countries.ttl index fe50b16..728877f 100644 --- a/semantic_enrichment/countries.ttl +++ b/semantic_enrichment/countries.ttl @@ -220,7 +220,6 @@ ns1:P17 <http://www.wikidata.org/entity/Q30> ; ns1:P625 "Point(-120.0 37.0)" . - <http://www.wikidata.org/entity/Q155> rdfs:label "Brazil" ; ns1:P17 <http://www.wikidata.org/entity/Q155> ; ns1:P30 <http://www.wikidata.org/entity/Q18> ; @@ -1157,7 +1156,9 @@ ns1:P625 "Point(28.0 -14.0)" . <http://www.wikidata.org/entity/Q96> rdfs:label "Mexico" ; - ns1:P30 <http://www.wikidata.org/entity/Q49> . + ns1:P17 <http://www.wikidata.org/entity/Q96> ; + ns1:P30 <http://www.wikidata.org/entity/Q49> ; + ns1:P625 "Point(-102.0 23.0)" . <http://www.wikidata.org/entity/Q1028> rdfs:label "Morocco" ; ns1:P17 <http://www.wikidata.org/entity/Q1028> ; @@ -1170,32 +1171,17 @@ <http://www.wikidata.org/entity/Q48> ; ns1:P625 "Point(94.25 66.416666666)" . -<http://www.wikidata.org/entity/Q183> rdfs:label "Germany" ; - ns1:P30 <http://www.wikidata.org/entity/Q46> . - -<http://www.wikidata.org/entity/Q29> rdfs:label "Spain" ; - ns1:P30 <http://www.wikidata.org/entity/Q46> . - -<http://www.wikidata.org/entity/Q38> rdfs:label "Italy" ; - ns1:P30 <http://www.wikidata.org/entity/Q46> . - <http://www.wikidata.org/entity/Q55> rdfs:label "Netherlands" ; ns1:P17 <http://www.wikidata.org/entity/Q29999> ; ns1:P30 <http://www.wikidata.org/entity/Q27611>, <http://www.wikidata.org/entity/Q46> ; ns1:P625 "Point(5.55 52.316666666)" . -<http://www.wikidata.org/entity/Q810> rdfs:label "Jordan" ; - ns1:P30 <http://www.wikidata.org/entity/Q48> . - <http://www.wikidata.org/entity/Q1044> rdfs:label "Sierra Leone" ; ns1:P17 <http://www.wikidata.org/entity/Q1044> ; ns1:P30 <http://www.wikidata.org/entity/Q15> ; ns1:P625 "Point(-11.916667 8.5)" . -<http://www.wikidata.org/entity/Q17> rdfs:label "Japan" ; - ns1:P30 <http://www.wikidata.org/entity/Q48> . - <http://www.wikidata.org/entity/Q948> rdfs:label "Tunisia" ; ns1:P17 <http://www.wikidata.org/entity/Q948> ; ns1:P30 <http://www.wikidata.org/entity/Q15> ; @@ -1348,6 +1334,61 @@ ns1:P17 <http://www.wikidata.org/entity/Q30> ; ns1:P625 "Point(-85.936008 32.933157)" . +<http://www.wikidata.org/entity/Q1922283> rdfs:label "Mehsana" ; + ns1:P17 <http://www.wikidata.org/entity/Q668> ; + ns1:P625 "Point(72.4 23.6)" . + +<http://www.wikidata.org/entity/Q3037> rdfs:label "Kathmandu" ; + ns1:P17 <http://www.wikidata.org/entity/Q837> ; + ns1:P625 "Point(85.366666666 27.716666666)" . + +<http://www.wikidata.org/entity/Q490> rdfs:label "Milan" ; + ns1:P17 <http://www.wikidata.org/entity/Q38> ; + ns1:P625 "Point(9.19 45.466944444)" . + +<http://www.wikidata.org/entity/Q677037> rdfs:label "Telangana" ; + ns1:P17 <http://www.wikidata.org/entity/Q668> ; + ns1:P625 "Point(79.59 17.99)" . + +<http://www.wikidata.org/entity/Q928> rdfs:label "Philippines" ; + ns1:P17 <http://www.wikidata.org/entity/Q928> ; + ns1:P30 <http://www.wikidata.org/entity/Q48> ; + ns1:P625 "Point(123.0 12.0)" . + +<http://www.wikidata.org/entity/Q1922283> rdfs:label "Mehsana" ; + ns1:P17 <http://www.wikidata.org/entity/Q668> ; + ns1:P625 "Point(72.4 23.6)" . + +<http://www.wikidata.org/entity/Q17> rdfs:label "Japan" ; + ns1:P17 <http://www.wikidata.org/entity/Q17> ; + ns1:P30 <http://www.wikidata.org/entity/Q48> ; + ns1:P625 "Point(136.0 35.0)" . + +<http://www.wikidata.org/entity/Q183> rdfs:label "Germany" ; + ns1:P17 <http://www.wikidata.org/entity/Q183> ; + ns1:P30 <http://www.wikidata.org/entity/Q46> ; + ns1:P625 "Point(10.0 51.0)" . + +<http://www.wikidata.org/entity/Q29> rdfs:label "Spain" ; + ns1:P17 <http://www.wikidata.org/entity/Q29> ; + ns1:P30 <http://www.wikidata.org/entity/Q46> ; + ns1:P625 "Point(-3.5 40.2)" . + +<http://www.wikidata.org/entity/Q810> rdfs:label "Jordan" ; + ns1:P17 <http://www.wikidata.org/entity/Q810> ; + ns1:P30 <http://www.wikidata.org/entity/Q48> ; + ns1:P625 "Point(36.5 31.2)" . + +<http://www.wikidata.org/entity/Q843> rdfs:label "Pakistan" ; + ns1:P17 <http://www.wikidata.org/entity/Q843> ; + ns1:P30 <http://www.wikidata.org/entity/Q48> ; + ns1:P625 "Point(71.0 30.0)" . + +<http://www.wikidata.org/entity/Q928> rdfs:label "Philippines" ; + ns1:P17 <http://www.wikidata.org/entity/Q928> ; + ns1:P30 <http://www.wikidata.org/entity/Q48> ; + ns1:P625 "Point(123.0 12.0)" . + <http://www.wikidata.org/entity/Q538> rdfs:label "Oceania" . <http://www.wikidata.org/entity/Q49> rdfs:label "North America" . <http://www.wikidata.org/entity/Q18> rdfs:label "South America" . |