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authorPeter Amstutz2020-04-20 17:45:17 -0400
committerPeter Amstutz2020-04-20 17:45:17 -0400
commitecae9863069585d88fc88b7f2a7434479f7425c1 (patch)
tree4ff5057e719b5d4f2471edd6100af8badcdcccf1
parentcc557a64bb489bb39c3abf932a6cdfb87ad4a383 (diff)
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Add readsMergeDedup.fasta to output
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
-rw-r--r--workflows/pangenome-generate/pangenome-generate.cwl3
1 files changed, 3 insertions, 0 deletions
diff --git a/workflows/pangenome-generate/pangenome-generate.cwl b/workflows/pangenome-generate/pangenome-generate.cwl
index 0cb1368..6794e2d 100644
--- a/workflows/pangenome-generate/pangenome-generate.cwl
+++ b/workflows/pangenome-generate/pangenome-generate.cwl
@@ -18,6 +18,9 @@ outputs:
odgiRDF:
type: File
outputSource: odgi2rdf/rdf
+ readsMergeDedup:
+ type: File
+ outputSource: dedup/readsMergeDedup
mergedMetadata:
type: File
outputSource: mergeMetadata/merged