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| author | lltommy | 2020-04-28 22:09:37 +0200 |
|---|---|---|
| committer | lltommy | 2020-04-28 22:09:37 +0200 |
| commit | ceb34edf0449cca328dfe8cf61277d7f05ea7cf9 (patch) | |
| tree | f5707375a869e3ce6b1e5adfadda5e0abe32def0 | |
| parent | b4ec03398d5e74eeb33a4a2a396fe4518c0c5465 (diff) | |
| download | bh20-seq-resource-ceb34edf0449cca328dfe8cf61277d7f05ea7cf9.tar.gz bh20-seq-resource-ceb34edf0449cca328dfe8cf61277d7f05ea7cf9.tar.lz bh20-seq-resource-ceb34edf0449cca328dfe8cf61277d7f05ea7cf9.zip | |
Decision to settle for float instead of integers for the coverage
| -rw-r--r-- | bh20sequploader/bh20seq-schema.yml | 2 | ||||
| -rw-r--r-- | bh20sequploader/bh20seq-shex.rdf | 2 | ||||
| -rw-r--r-- | example/maximum_metadata_example.yaml | 2 |
3 files changed, 3 insertions, 3 deletions
diff --git a/bh20sequploader/bh20seq-schema.yml b/bh20sequploader/bh20seq-schema.yml index f36a6e6..d3e992a 100644 --- a/bh20sequploader/bh20seq-schema.yml +++ b/bh20sequploader/bh20seq-schema.yml @@ -152,7 +152,7 @@ $graph: _id: http://www.ebi.ac.uk/efo/EFO_0002699 sequencing_coverage: doc: Sequence coverage defined as the average number of reads representing a given nucleotide (e.g. [100]) - if multiple technologies were used multiple float values can be submitted e.g. [100, 20] - type: int[]? + type: float[]? jsonldPredicate: _id: http://purl.obolibrary.org/obo/FLU_0000848 additional_technology_information: diff --git a/bh20sequploader/bh20seq-shex.rdf b/bh20sequploader/bh20seq-shex.rdf index 4ec957d..fe6deee 100644 --- a/bh20sequploader/bh20seq-shex.rdf +++ b/bh20sequploader/bh20seq-shex.rdf @@ -57,7 +57,7 @@ PREFIX wikidata: <http://www.wikidata.org/entity/> :technologyShape { obo:OBI_0600047 IRI {0,3} ; efo:EFO_0002699 xsd:string ?; - obo:FLU_0000848 xsd:integer {0,2}; + obo:FLU_0000848 xsd:float {0,3}; sio:SIO_001167 xsd:string ?; } diff --git a/example/maximum_metadata_example.yaml b/example/maximum_metadata_example.yaml index 260e4e4..0ba9ada 100644 --- a/example/maximum_metadata_example.yaml +++ b/example/maximum_metadata_example.yaml @@ -29,7 +29,7 @@ virus: technology: sample_sequencing_technology: [http://www.ebi.ac.uk/efo/EFO_0009173,http://www.ebi.ac.uk/efo/EFO_0009173] sequence_assembly_method: Protocol used for assembly - sequencing_coverage: [70, 100] + sequencing_coverage: [70.0, 100.0] additional_technology_information: Optional free text field for addtional information submitter: |