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| author | AndreaGuarracino | 2020-09-04 11:34:38 +0200 |
|---|---|---|
| committer | AndreaGuarracino | 2020-09-04 11:34:38 +0200 |
| commit | 8417375cd86c6ba2f29511964544a267ed883ccd (patch) | |
| tree | ade90f75e8230cf045ea5942caa53a7e5d9ae550 | |
| parent | 327b6db4e7c9ceda190617f2a793e6a646bb30cc (diff) | |
| download | bh20-seq-resource-8417375cd86c6ba2f29511964544a267ed883ccd.tar.gz bh20-seq-resource-8417375cd86c6ba2f29511964544a267ed883ccd.tar.lz bh20-seq-resource-8417375cd86c6ba2f29511964544a267ed883ccd.zip | |
sra script re-enabled, ready for tests
| -rw-r--r-- | scripts/create_sra_metadata/create_sra_metadata.py | 4 |
1 files changed, 2 insertions, 2 deletions
diff --git a/scripts/create_sra_metadata/create_sra_metadata.py b/scripts/create_sra_metadata/create_sra_metadata.py index 7e0fc83..8866d01 100644 --- a/scripts/create_sra_metadata/create_sra_metadata.py +++ b/scripts/create_sra_metadata/create_sra_metadata.py @@ -328,8 +328,8 @@ for i, EXPERIMENT_PACKAGE in enumerate(EXPERIMENT_PACKAGE_SET): if accession not in not_created_accession_dict: num_yaml_created += 1 - #with open(os.path.join(dir_yaml, '{}.yaml'.format(accession)), 'w') as fw: - # json.dump(info_for_yaml_dict, fw, indent=2) + with open(os.path.join(dir_yaml, '{}.yaml'.format(accession)), 'w') as fw: + json.dump(info_for_yaml_dict, fw, indent=2) if len(missing_value_list) > 0: path_missing_terms_tsv = 'missing_terms.sra.tsv' |