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authorPeter Amstutz2020-07-08 15:48:44 -0400
committerPeter Amstutz2020-07-08 15:48:44 -0400
commit46e28c1d5da1c242fe49e5e5d6fdcae7dc544070 (patch)
treeb9c22c396e7845ce91a831255cef09bbb61e5ac8
parentcbb191cb23f4e40b1a1d3024401960939fda9bc3 (diff)
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Hack in a valid-uri check
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
-rw-r--r--bh20sequploader/qc_metadata.py4
1 files changed, 4 insertions, 0 deletions
diff --git a/bh20sequploader/qc_metadata.py b/bh20sequploader/qc_metadata.py
index 2b57991..3e1e471 100644
--- a/bh20sequploader/qc_metadata.py
+++ b/bh20sequploader/qc_metadata.py
@@ -27,6 +27,10 @@ def qc_metadata(metadatafile):
g = schema_salad.jsonld_context.makerdf("workflow", doc, document_loader.ctx)
rslt, reason = evaluate(g, shex, doc["id"], "https://raw.githubusercontent.com/arvados/bh20-seq-resource/master/bh20sequploader/bh20seq-shex.rdf#submissionShape")
+ # As part of QC make sure serialization works too, this will raise
+ # an exception if there are invalid URIs.
+ g.serialize(format="ntriples")
+
if not rslt:
raise Exception(reason)