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| author | lltommy | 2020-04-22 20:43:09 +0200 |
|---|---|---|
| committer | lltommy | 2020-04-22 20:43:09 +0200 |
| commit | 2d3f8b9707bd13433ca82449ad82dbc406a28f95 (patch) | |
| tree | 97369ec8495ba6fa4784ed874017d266f9e04a64 | |
| parent | a12fe94f174da766be612fbb2712b4db2ba98296 (diff) | |
| download | bh20-seq-resource-2d3f8b9707bd13433ca82449ad82dbc406a28f95.tar.gz bh20-seq-resource-2d3f8b9707bd13433ca82449ad82dbc406a28f95.tar.lz bh20-seq-resource-2d3f8b9707bd13433ca82449ad82dbc406a28f95.zip | |
Including restrictions to the host status
| -rw-r--r-- | bh20sequploader/bh20seq-options.yml | 9 | ||||
| -rw-r--r-- | bh20sequploader/bh20seq-schema.yml | 2 | ||||
| -rw-r--r-- | bh20sequploader/bh20seq-shex.rdf | 2 |
3 files changed, 11 insertions, 2 deletions
diff --git a/bh20sequploader/bh20seq-options.yml b/bh20sequploader/bh20seq-options.yml index da47e1a..68f6e79 100644 --- a/bh20sequploader/bh20seq-options.yml +++ b/bh20sequploader/bh20seq-options.yml @@ -14,6 +14,15 @@ host_sex: Male: http://purl.obolibrary.org/obo/PATO_0000384 Female: http://purl.obolibrary.org/obo/PATO_0000383 +host_health_status: + healthy: http://purl.obolibrary.org/obo/NCIT_C115935 + asymptomatic: http://purl.obolibrary.org/obo/NCIT_C3833 + sympotmatic: http://purl.obolibrary.org/obo/NCIT_C25269 + admitted to hospital: http://purl.obolibrary.org/obo/GENEPIO_0002020 + discharged from hospital: http://purl.obolibrary.org/obo/GENEPIO_0001849 + dead: http://purl.obolibrary.org/obo/NCIT_C28554 + alive: http://purl.obolibrary.org/obo/NCIT_C37987 + sample_sequencing_technology: Illumina NextSeq 500: http://www.ebi.ac.uk/efo/EFO_0009173 Illumina NextSeq 550: http://www.ebi.ac.uk/efo/EFO_0008566 diff --git a/bh20sequploader/bh20seq-schema.yml b/bh20sequploader/bh20seq-schema.yml index 80013c3..232ccc6 100644 --- a/bh20sequploader/bh20seq-schema.yml +++ b/bh20sequploader/bh20seq-schema.yml @@ -44,7 +44,7 @@ $graph: _type: "@id" noLinkCheck: true host_health_status: - doc: A condition or state at a particular time + doc: A condition or state at a particular time, must be one of the following (obo:NCIT_C115935 obo:NCIT_C3833 obo:NCIT_C25269 obo:GENEPIO_0002020 obo:GENEPIO_0001849 obo:NCIT_C28554 obo:NCIT_C37987) type: string? jsonldPredicate: http://purl.obolibrary.org/obo/NCIT_C25688 host_treatment: diff --git a/bh20sequploader/bh20seq-shex.rdf b/bh20sequploader/bh20seq-shex.rdf index 8d0055e..bb15f91 100644 --- a/bh20sequploader/bh20seq-shex.rdf +++ b/bh20sequploader/bh20seq-shex.rdf @@ -23,7 +23,7 @@ PREFIX wikidata: <http://www.wikidata.org/entity/> obo:PATO_0000047 [ obo:PATO_0000384 obo:PATO_0000383 ] ?; obo:PATO_0000011 xsd:integer ?; obo:NCIT_C42574 [ obo:UO_~ ] ?; - obo:NCIT_C25688 xsd:string ? ; + obo:NCIT_C25688 [obo:NCIT_C115935 obo:NCIT_C3833 obo:NCIT_C25269 obo:GENEPIO_0002020 obo:GENEPIO_0001849 obo:NCIT_C28554 obo:NCIT_C37987 ] ? ; efo:EFO_0000727 xsd:string ?; obo:VO_0000002 xsd:string ?; sio:SIO_001167 xsd:string ?; |