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Instructions for download and/or prepare the data and/or the metadata

Just go into the download_genbank_data or download_sra_data directory and execute the python3 script inside.

  • download_genbank_data/from_genbank_to_fasta_and_yaml.py downloads the data and the matadata, preparing the FASTA and the YAML files;
  • download_sra_data/download_sra_data.py creates the metadata in the form of YAML files from the SraExperimentPackage.XXX.xml.gz file in the same directory.