Instructions for download and/or prepare the data and/or the metadata
Just go into the download_genbank_data
or download_sra_data
directory and execute the python3 script inside.
download_genbank_data/from_genbank_to_fasta_and_yaml.py
downloads the data and the matadata, preparing the FASTA and the YAML files;download_sra_data/download_sra_data.py
creates the metadata in the form of YAML files from the SraExperimentPackage.XXX.xml.gz file in the same directory.