| Age | Commit message (Collapse) | Author |
|---|
|
Resolve YAML inputs file type ambiguities by reading them along with
the workflow file and using the workflow input types to guide their
type coercion.
|
|
ravanan will commonly be used to run long-running workflows on HPC
clusters. Therefore, it is reasonable that it is a bit more talkative.
The user will want to get some feedback about progress.
|
|
We want to cover as much of the program as possible with a
parameterization of %log-level and %traces. This way, logging of the
program can be controlled to the largest extent possible.
|
|
"more than one" is simpler English.
|
|
|
|
|
|
User errors are caused by incorrect input from the user, rather than
by actual bugs in the code. user-error is named after the similarly
named elisp function.
* bin/ravanan: Import (ravanan work ui).
(%options, invalid-option, main): Use user-error instead of error.
|
|
* bin/ravanan (print-short-usage): New function.
(main): Print usage when arguments are not matched.
|
|
* bin/ravanan: Import (ravanan work vectors).
|
|
This reverts commit 17b88bd2ca1411fbf2799e0e194d7052c059a36b.
(ravanan command-line-tool) is required for manifest-file-error?.
|
|
* bin/ravanan (print-usage): Add newline at the end.
|
|
* bin/ravanan: Import (ravanan store).
(main): Create store directory when it does not exist.
* ravanan/store.scm (make-store): New public function.
|
|
* bin/ravanan: Do not import (ravanan command-line-tool).
|
|
* ravanan/slurm-api.scm: Import (ravanan verbosity).
(submit-job, job-state): Add traces.
* bin/ravanan (%options): Support slurm-api in --trace option.
(print-usage): Document it.
|
|
* ravanan/verbosity.scm: New file.
* bin/ravanan: Import (ravanan verbosity).
(%options): Add trace.
(print-usage): Document it.
(main): Set default value of traces. Parameterize %traces when running
workflow.
|
|
* bin/ravanan (main): Do not specify the
default (current-output-port).
|
|
* bin/ravanan: Import (ravanan work utils).
(%options): Add --output-directory.
(print-usage): Document it.
(symlink-to-output-directory): New function.
(main): Symlink to output directory if it is specified.
|
|
* bin/ravanan (main): Indicate specifically that the --store argument
was not specified.
|
|
* bin/ravanan (main): Indicate specifically that the --scratch
argument was not specified.
|
|
* bin/ravanan (main): Indicate specifically that the --slurm-jwt
argument was not specified.
|
|
* ravanan/config.scm.in (%project, %version): New variables.
* Makefile (version): New variable.
(%.scm): Substitute %project and %version too.
* bin/ravanan: Import (ravanan config).
(%options): Add --version.
(print-usage): Document it.
(main): Implement it.
|
|
* ravanan/command-line-tool.scm: Import (rnrs conditions) and (rnrs
exceptions).
(&manifest-file-error): New condition type.
(load-manifest): Raise &manifest-file-error when loading the manifest
file fails.
* bin/ravanan: Import (rnrs exceptions) and (ravanan
command-line-tool).
(main): Handle manifest file errors bubbled up from lower down the
stack.
|
|
* bin/ravanan (main): Remove default Guix manifest.
|
|
* bin/ravanan: Import (guix channels).
(%options): Add guix-channels.
(print-usage): Document it.
(main): Load channels from channels file if specified.
|
|
* ravanan/command-line-tool.scm: Import (guix inferior).
(call-with-inferior): New function.
(run-command-line-tool): Accept channels argument and pass it on to
build-command-line-tool-script.
(build-command-line-tool-script): Accept channels argument and pass it
on to manifest-file->environment.
(manifest-file->environment): Accept channels argument. Build manifest
in Guix inferior when channels is provided.
* ravanan/workflow.scm (workflow-scheduler): Accept channels argument
and pass it on to run-command-line-tool.
(run-workflow): Accept channels argument and pass it on to
workflow-scheduler.
* bin/ravanan (main): Pass #f as channels to run-workflow.
|
|
* ravanan/batch-system.scm (<slurm-api-batch-system>)[nice]: Add
field.
* bin/ravanan (%options): Add slurm-nice.
(print-usage): Document it.
(main): Initialize nice field of <slurm-api-batch-system> object.
* ravanan/command-line-tool.scm (run-command-line-tool): Pass
#:nice argument to submit-job.
* ravanan/slurm-api.scm (submit-job): Accept #:nice argument.
|
|
* ravanan/batch-system.scm (<slurm-api-batch-system>)[partition]: Add
field.
* bin/ravanan (%options): Add slurm-partition.
(print-usage): Document it.
(main): Initialize partition field of <slurm-api-batch-system> object.
* ravanan/command-line-tool.scm (run-command-line-tool): Pass
#:partition argument to submit-job.
* ravanan/slurm-api.scm (submit-job): Accept #:partition argument.
|
|
A <slurm-api-batch-system> record type allows us an easy way to group
and pass along parameters required by the slurm-api batch system.
* ravanan/batch-system.scm: New file.
* bin/ravanan: Import (ravanan batch-system).
(main): Create <slurm-api-batch-system> object for batch-system
argument. Do not pass #:slurm-api-endpoint and #:slurm-jwt arguments.
*
ravanan/command-line-tool.scm: Import (ravanan batch-system).
(command-line-tool-supported-requirements): Check for slurm-api batch
system using slurm-api-batch-system?.
(run-command-line-tool): Check for slurm-api batch system using
slurm-api-batch-system?. Do not accept #:slurm-api-endpoint and
#:slurm-jwt arguments.
* ravanan/workflow.scm: Import (ravanan batch-system).
(workflow-scheduler): Do not accept #:slurm-api-endpoint and
#:slurm-jwt arguments. Pass batch-system to job-state-status.
(run-workflow): Check for slurm-api batch system using
slurm-api-batch-system?. Do not accept #:slurm-api-endpoint and
#:slurm-jwt arguments.
* ravanan/job-state.scm: Import (ravanan batch-system).
(job-state-status): Do not accept #:slurm-api-endpoint and #:slurm-jwt
arguments. Accept batch-system argument.
|
|
* bin/ravanan: Move to (ravanan command-line-tool). Add comment about
declarative modules.
(main): Pass manifest file path to run-workflow.
* ravanan/command-line-tool.scm (run-command-line-tool,
build-command-line-tool-script): Accept manifest file path instead of
manifest.
* ravanan/workflow.scm (workflow-scheduler, run-workflow): Accept
manifest file path instead of manifest.
|
|
* bin/ravanan: Do not import (gnu packages) and (guix profiles).
(load-manifest): New function.
(main): Use load-manifest.
|
|
* bin/ravanan (read-jwt): Explain why we support the SLURM_JWT=token
format.
|
|
* bin/ravanan: Import (srfi srfi-26) and (ravanan utils).
(read-jwt): Support SLURM_JWT=token format.
|
|
* bin/ravanan (read-jwt): New function.
(main): Call read-jwt.
|
|
* bin/ravanan: Import (guix profiles).
|
|
* bin/ravanan (print-usage): New function.
(main): Use print-usage.
|
|
* bin/ravanan (invoke): Delete function.
|
|
|
