ravanan - High-reproducibility CWL runner powered by Guix

Age	Commit message (Collapse)	Author
43 hours	README: Move ravanan options before workflow and inputs files. HEAD main	Arun Isaac
	This order is more conventional.
43 hours	README: Describe Hello World example in doc directory.	Arun Isaac

43 hours	README: Replace JSON inputs file with YAML inputs file.	Arun Isaac
	This was missed out in 1e8709f7a1b2a8c4faf4342691cd1fe05712c5a6.
43 hours	e2e-tests: Add example Hello World workflow from the documentation.	Arun Isaac
	We want to ensure that the Hello World workflow in our README docs always works!
43 hours	command-line-tool: Handle absent arguments field.	Arun Isaac

43 hours	guix: Copy CWL files in E2E tests.	Arun Isaac
	So far, we only supported ccwl sources to be compiled in E2E tests. Now, we also support CWL files that must simply be copied.
44 hours	doc: Use YAML inputs file in Hello World example.	Arun Isaac

44 hours	store: Create store subdirectories if they don't exist.	Arun Isaac

2 days	work/command-line-tool: Avoid infinite recursion in matching floats.	Arun Isaac

3 days	work/command-line-tool: Accept ints as floats too.	Arun Isaac

3 days	store: Spin out link-or-copy function.	Arun Isaac

3 days	guix: Use latest ccwl in E2E tests.	Arun Isaac

3 days	workflow: Handle boolean false input and default value.	Arun Isaac

3 days	work/command-line-tool: Do not add defaults.	Arun Isaac
	Defaults have already been added by the scheduler.
3 days	workflow: Combine add-defaults into resolve-inputs.	Arun Isaac
	Combine adding defaults and checking types into input resolution. These functions belong together and combining them avoids an unnecessary repeated checking of types.
3 days	workflow: Identify optional inputs with a boolean #f default.	Arun Isaac

3 days	workflow: Clarify that optional-input? only returns a truthy value.	Arun Isaac
	optional-input? returns a truthy value, not #t itself.
3 days	workflow: Let optional-input? be a true predicate.	Arun Isaac
	optional-input? must be a predicate that returns #t or #f. It must not return the id of the input.
3 days	command-line-tool: Remove unused build-command function.	Arun Isaac
	The build-command function was moved to (ravanan work command-line-tool), but somehow an unused copy remained in (ravanan command-line-tool).
3 days	workflow: Do not validate in run-workflow.	Arun Isaac

4 days	tests: Test reader end-to-end, don't test specific functions.	Arun Isaac
	This makes the tests less fragile—that is, less subject to breakage due to code refactoring. And, we can be more confident that the reader actually works end-to-end.
4 days	reader: Resolve type ambiguities in default inputs.	Arun Isaac

4 days	reader: Normalize all formals, not just File type formals.	Arun Isaac

5 days	workflow: Add defaults to inputs even with Workflow class workflows.	Arun Isaac
	Earlier, we were adding defaults only with CommandLineTool class workflows, and ignoring defaults in Workflow class workflows.
5 days	workflow: Do not require user to provide inputs with a default.	Arun Isaac
	It is ok for the user to not provide inputs that have a default value.
5 days	guix: Do not require listing E2E test files.	Arun Isaac
	It is not worth the trouble listing each E2E test file individually and compling them in separate derivations.
7 days	HACKING: Add release instructions.	Arun Isaac

7 days	image: Remove trailing dot in license file.	Arun Isaac

7 days	guix: Promote images license to web page.	Arun Isaac

7 days	guix: Add releases directory to website.	Arun Isaac
	This was missed out on 43d4d96f8de9fabaa889eae62e86e7ed49cf6575.
7 days	Add v0.2.0 release tarballs.	Arun Isaac

7 days	guix: Add Download section to website.	Arun Isaac

7 days	Makefile: Bump version to 0.2.0. v0.2.0	Arun Isaac

7 days	README: Add end-to-end tests CI badge.	Arun Isaac

7 days	README: Detail alt text for CI badge.	Arun Isaac

7 days	e2e-tests: Pass --no-same-owner flag to tar.	Arun Isaac
	This is required to run tar successfully within the CI end-to-end tests container.
8 days	website: Add CSS.	Arun Isaac

8 days	guix: Push version detection into G-expression.	Arun Isaac
	We push version detection into the G-expression. This way, it won't interfere with channel compilation.
8 days	guix: Import (guix packages).	Arun Isaac

8 days	guix: Fix double ungexp.	Arun Isaac

8 days	e2e-tests: Use YAML, instead of JSON, job files.	Arun Isaac
	Now that we have resolved type ambiguities in YAML input files, prefer YAML job files to JSON job files.
8 days	HACKING: Mention that E2E tests must be run outside guix shell.	Arun Isaac

8 days	reader: Resolve YAML inputs file type ambiguities.	Arun Isaac
	Resolve YAML inputs file type ambiguities by reading them along with the workflow file and using the workflow input types to guide their type coercion.
8 days	reader: Use CWL types in type coercion.	Arun Isaac

8 days	HACKING: Use -m, not -Df, to build manifest.	Arun Isaac

8 days	Demote store hit (cache hit) messages to debug level.	Arun Isaac
	Retrieving results from the store will be very quick, and will happen often. There is no need to trouble the user with this information (unless they want to hear it).
8 days	bin: Set info as default log level.	Arun Isaac
	ravanan will commonly be used to run long-running workflows on HPC clusters. Therefore, it is reasonable that it is a bit more talkative. The user will want to get some feedback about progress.
8 days	guix: Use guile-run64 from Guix upstream.	Arun Isaac

8 days	guix: Build run64 without guile-chibi-match.	Arun Isaac

8 days	guix: Add G-expressions to build website.	Arun Isaac