pyhegp - Homomorphic encryption of genotypes and phenotypes

Age	Commit message (Collapse)	Author
4 days	Generate unique SNPs in genotype frames without dropping duplicates.	Arun Isaac
	Earlier, we were generating unique SNPs in genotype frames by dropping duplicates. This meant we couldn't control the number of SNPs. Rejection sampling is also not an option because it is too expensive. So, we now generate unique SNPs directly, by first generating a list with unique elements and then converting to a data frame.
4 days	Deduplicate genotype frame metadata generation.	Arun Isaac
	Abstract out generation of genotype frame metadata (namely chromosome, position and reference) from summaries and genotype_frames into a new helper function genotype_metadata.
5 days	Limit values in genotype and phenotype strategies.	Arun Isaac

5 days	Parameterize number of samples in phenotype frame strategy.	Arun Isaac

5 days	Parameterize number of samples in genotype frame strategy.	Arun Isaac

5 days	Parameterize presence of reference column in genotype frame strategy.	Arun Isaac

5 days	Add keys strategy.	Arun Isaac
	Add keys strategy, and use it.
7 days	Add is_phenotype_metadata_column.	Arun Isaac
	Promote phenotype_reserved_column_name_p from helpers.strategies to is_phenotype_metadata_column in pyhegp.serialization.
7 days	Drop duplicates in generated test phenotype frames.	Arun Isaac

7 days	Add is_genotype_metadata_column.	Arun Isaac
	Promote genotype_reserved_column_name_p from helpers.strategies to is_genotype_metadata_column in pyhegp.serialization, and use it everywhere.
7 days	Drop duplicates in generated test genotype frames.	Arun Isaac

7 days	Move hypothesis strategies to separate file.	Arun Isaac
	These strategies may be used by other test modules as well.