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pyhegp was crashing if the optional reference column was absent. We
handle it correctly now. And, we add several test cases to catch this
in the future.
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Reducing precision lowers the file size and makes the files more
human-comprehensible.
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* pyhegp/pyhegp.py: Import reduce from functools.
(pool_summaries, encrypt_genotype): New functions.
(pool): Use pool_summaries.
(encrypt): Use encrypt_genotype.
* tests/test_pyhegp.py: Import pandas; Summary, read_summary and
read_genotype from pyhegp.serialization.
(test_pool, test_encrypt): New tests.
* test-data/encrypt-test-encrypted-genotype.tsv,
test-data/encrypt-test-genotype.tsv, test-data/encrypt-test-key,
test-data/encrypt-test-summary, test-data/pool-test-complete-summary,
test-data/pool-test-summary1, test-data/pool-test-summary2: New files.
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* README.md (How to use): Indent down into "Joint/federated analysis
with many data owners" section.
[Simple data sharing]: New section.
* doc/generate-images.sh: Add simple workflow.
* doc/workflow.png: Rename to doc/joint-workflow.png.
* doc/workflow.uml: Rename to doc/joint-workflow.uml.
* doc/simple-workflow.png, doc/simple-workflow.uml: New files.
* tests/test_pyhegp.py: Import pytest.
(test_simple_workflow): New test.
* test-data/genotype.tsv: New file.
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* tests/test_pyhegp.py: Import CliRunner from click.testing, and main
from pyhegp.pyhegp.
(test_joint_workflow): New test.
* test-data/genotype0.tsv, test-data/genotype1.tsv,
test-data/genotype2.tsv, test-data/genotype3.tsv: New files.
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