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We no longer commit the built images into the git repository.
Committing build artifacts into the repository is never good practice.
And, linking to CI build artifacts is also more automatic and
seamless.
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A cat-phenotype subcommand is coming. Hence rename this.
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Make output ciphertext file path implicit; infer it by appending
".hegp" to the plaintext file. We take inspiration from GnuPG.
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End users who install pyhegp via pip cannot run the test suite.
Clarify this in the README. Perhaps, in the future, we should move
these developer-oriented instructions to a separate document.
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If not separated, GitHub combines the table of contents with the list
of papers in the introduction.
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A table of contents gives people a brief overview of what's in the
README, and allows them to jump to the section they are interested in.
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Readers are more likely to follow through to the file formats
documentation if there is a link.
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Not everyone may want to create a virtual environment. For example, on
some HPC machines, creating a virtual environment is complicated or
does not work.
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* README.md (How to use): Indent down into "Joint/federated analysis
with many data owners" section.
[Simple data sharing]: New section.
* doc/generate-images.sh: Add simple workflow.
* doc/workflow.png: Rename to doc/joint-workflow.png.
* doc/workflow.uml: Rename to doc/joint-workflow.uml.
* doc/simple-workflow.png, doc/simple-workflow.uml: New files.
* tests/test_pyhegp.py: Import pytest.
(test_simple_workflow): New test.
* test-data/genotype.tsv: New file.
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* README.md: Mention TianjingZhao2023 paper.
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* README.md: Add CI badge.
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* doc/workflow.uml, doc/workflow.png, doc/generate-images.sh: New
files.
* README.md (How to use): New section.
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* README.md (Install development version): New section.
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* test_pyhegp.py: New file.
* README.md (Run tests): New section.
* guix.scm: Import python-hypothesis from (gnu packages check).
(python-pyhegp)[arguments]: Enable tests.
[native-inputs]: Add python-hypothesis.
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* README.md: Add missing preposition "in".
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