| Age | Commit message (Collapse) | Author | |
|---|---|---|---|
| 6 days | Do not hide -S, --summarize flags. | Arun Isaac | |
| 6 days | Remove threads variable name. | Arun Isaac | |
| The threads variable name can be derived automatically from the --threads option name. | |||
| 6 days | Add -P, --progress flags. | Arun Isaac | |
| 10 days | Expose domagi script visible with pre-inst-env. | Arun Isaac | |
| This eases testing of domagi during development. | |||
| 10 days | Build duckdb database only once in a setup fixture. | Arun Isaac | |
| 10 days | Symlink guix.scm to domagi-package.scm. | Arun Isaac | |
| 10 days | Update odgi to 0.9.4. | Arun Isaac | |
| 10 days | Initialize schema in crush subcommand. | Arun Isaac | |
| We need to initialize the schema in the output database so that we get things like views. | |||
| 10 days | Add chop subcommand. | Arun Isaac | |
| 10 days | When testing, canonicalize links before comparing them. | Arun Isaac | |
| 10 days | Canonicalize L line when building database. | Arun Isaac | |
| 2026-08-15 | Error out if user-specified path does not exist. | Arun Isaac | |
| 2026-08-15 | Add CI badges to README. | Arun Isaac | |
| 2026-08-15 | Add domagi overlap --paths. | Arun Isaac | |
| 2026-08-15 | Document website building instructions. | Arun Isaac | |
| 2026-08-15 | When sorting a data frame by a single column, only pass in a string. | Arun Isaac | |
| 2026-08-15 | Add domagi overlap. | Arun Isaac | |
| 2026-08-14 | Move path_length to schema as view. | Arun Isaac | |
| 2026-08-14 | Remove TODO note about synopses. | Arun Isaac | |
| This was completed in 185b459cc11a2e8661817f2750d98f9051541761. | |||
| 2026-08-14 | Reverse complement sequences as required in FASTA. | Arun Isaac | |
| 2026-08-14 | Fix paths --fasta SQL query. | Arun Isaac | |
| The SQL query was completely wrong. It was most likely meant to work with an earlier version of the schema. | |||
| 2026-08-14 | Test paths --fasta. | Arun Isaac | |
| 2026-08-14 | Add manual to website. | Arun Isaac | |
| 2026-08-13 | Add manual. | Arun Isaac | |
| 2026-08-13 | Add website. | Arun Isaac | |
| 2026-08-13 | Add introductory paragraph to README. | Arun Isaac | |
| 2026-08-13 | Add short_help for subcommands. | Arun Isaac | |
| 2026-07-27 | Make git repo a Guix channel. | Arun Isaac | |
| 2026-07-27 | Add hacking instructions. | Arun Isaac | |
| 2026-07-27 | Initial commit | Arun Isaac | |
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index : domagi | |
| DuckDB-powered pangenome Swiss Army knife |
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