| Age | Commit message (Collapse) | Author | |
|---|---|---|---|
| 32 hours | Add paper workflow. HEAD paper-2026-workflow main | Arun Isaac | |
| This workflow is used to compute the results in the paper. | |||
| 47 hours | Add domagi project version. | Arun Isaac | |
| 47 hours | Add duckdb fallback discovery. | Arun Isaac | |
| 48 hours | Add verstable meson wrap dependency. | Arun Isaac | |
| This lets us support users on distributions that don't have verstable packaged, while at the same time freeing us from having to vendor verstable sources in our git repo. | |||
| 2 days | Use verstable from Guix upstream. | Arun Isaac | |
| 2 days | Document database schema in the manual. | Arun Isaac | |
| 2 days | Add license information to README. | Arun Isaac | |
| 2 days | Add Contributing section to README. | Arun Isaac | |
| 5 days | Link to the manual from the README. | Arun Isaac | |
| We are forced to use the full URL so that the README works both on GitHub and when rendered as the website. | |||
| 2026-09-07 | Add installation instructions to README. | Arun Isaac | |
| 2026-08-28 | Bridge extracted subpaths. | Arun Isaac | |
| 2026-08-28 | Split subpaths selected by extract path range into discrete fragments. | Arun Isaac | |
| When `domagi extract` is given a path range, it may select discontinuous fragments of other paths. These fragments must be output as separate paths, not erroneously merged together. | |||
| 2026-08-27 | Symlink in docbook schema from the guix shell environment. | Arun Isaac | |
| 2026-08-27 | Add docbook dependencies to manifest. | Arun Isaac | |
| 2026-08-27 | Detach output database after extract. | Arun Isaac | |
| 2026-08-27 | Order path_segment by the output coordinates, not the input. | Arun Isaac | |
| In domagi extract, order path_segment by the output start and end coordinates, not the input start and end coordinates. We achieve this by renaming the output coordinates "start" and "end" respectively. | |||
| 2026-08-27 | End meson.build with a newline. | Arun Isaac | |
| 2026-08-27 | Move extract --context-steps option close to --node. | Arun Isaac | |
| 2026-08-27 | Refactor extract --path-range query into extract-path-range.sql. | Arun Isaac | |
| 2026-08-27 | Comment on extract-node-traversal.sql. | Arun Isaac | |
| 2026-08-27 | Remove leading whitespace. | Arun Isaac | |
| 2026-08-27 | Provide type and metavar for depth --bed-input. | Arun Isaac | |
| We also fix the test to pass in a string rather than a Path. | |||
| 2026-08-26 | Provide path range format in usage string. | Arun Isaac | |
| 2026-08-26 | Indicate that there is no graph traversal with --path-range. | Arun Isaac | |
| 2026-08-26 | Re-order AND clauses for readability. | Arun Isaac | |
| It's nice to have the $1, $2 and $3 line up in that order. | |||
| 2026-08-26 | Append extracted path range to path name. | Arun Isaac | |
| 2026-08-26 | Re-order extracted path_segment table for optimal access. | Arun Isaac | |
| 2026-08-26 | Install extract-node-traversal.sql. | Arun Isaac | |
| 2026-08-26 | Do not traverse graph when extracting segments in path range. | Arun Isaac | |
| 2026-08-26 | Allow grouping options into separate lists in refentries. | Arun Isaac | |
| 2026-08-26 | Move node traversal extraction query to its own file. | Arun Isaac | |
| 2026-08-26 | Traverse symmetrically in both directions with extract. | Arun Isaac | |
| 2026-08-26 | Test domagi extract on node extraction. | Arun Isaac | |
| 2026-08-25 | Only require documentation of non-hidden options. | Arun Isaac | |
| 2026-08-25 | Do not hide -S, --summarize flags. | Arun Isaac | |
| 2026-08-25 | Remove threads variable name. | Arun Isaac | |
| The threads variable name can be derived automatically from the --threads option name. | |||
| 2026-08-25 | Add -P, --progress flags. | Arun Isaac | |
| 2026-08-21 | Expose domagi script visible with pre-inst-env. | Arun Isaac | |
| This eases testing of domagi during development. | |||
| 2026-08-21 | Build duckdb database only once in a setup fixture. | Arun Isaac | |
| 2026-08-21 | Symlink guix.scm to domagi-package.scm. | Arun Isaac | |
| 2026-08-21 | Update odgi to 0.9.4. | Arun Isaac | |
| 2026-08-21 | Initialize schema in crush subcommand. | Arun Isaac | |
| We need to initialize the schema in the output database so that we get things like views. | |||
| 2026-08-21 | Add chop subcommand. | Arun Isaac | |
| 2026-08-21 | When testing, canonicalize links before comparing them. | Arun Isaac | |
| 2026-08-21 | Canonicalize L line when building database. | Arun Isaac | |
| 2026-08-15 | Error out if user-specified path does not exist. | Arun Isaac | |
| 2026-08-15 | Add CI badges to README. | Arun Isaac | |
| 2026-08-15 | Add domagi overlap --paths. | Arun Isaac | |
| 2026-08-15 | Document website building instructions. | Arun Isaac | |
| 2026-08-15 | When sorting a data frame by a single column, only pass in a string. | Arun Isaac | |
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